Function reference • rj

Primarily AE article management functions Functions needed in the AE workflow
`match_keywords()`	Find reviewers through keywords matching
`add_reviewer()`	Invite an reviewer
`decline_reviewer()` `agree_reviewer()` `abandon_reviewer()`	Update reviewer's response to invite
`add_review()`	Add the review file received from the reviewer
`list_reviewers()` `reviewer_status()`	Summarise reviewers' progression of an article
`update_status()`	Update the article status
Primarily Editor article management functions Functions to assist the Editors handle submissions
`ae_workload()` `get_AE()`	Check the number of articles an AE is currently working on
`add_ae()`	Add AE to the DESCRIPTION
`update_status()`	Update the article status
`reject()` `reject_format()` `accept()` `withdraw()` `major_revision()` `minor_revision()` `check_in_submission_folder()`	Accept, reject, or withdraw an article
`list_reviewers()` `reviewer_status()`	Summarise reviewers' progression of an article
`summarise_articles()` `get_assignments()` `get_unassigned()` `find_articles()` `get_latest()`	Summarise editors current in-tray
`tabulate_articles()`	Tabulate article descriptions
`reviewer_summary()`	Summarise the reviewer's agree/decline ratio based on past invites
Primarily Editor-in-Chief functions Functions to assist the EiC extract new submissions, build the article folder
`get_submissions()`	Download submissions.
`acknowledge_submission()`	Send submission acknowledgements
`acknowledge_submission_text()`	Create an acknowledgement email in correspondence folder
`acknowledge_revision()`	Send revision received acknowledgement
`online_metadata()`	Generate metadata needed for website.
`active_articles()` `accepted_articles()`	List articles.
`get_accepted_but_not_online()`	Get articles to go online
`author_emails()`	Extract email from leading author of an issue for emailing
Utilities Vectors of valid status
`valid_status`	A list of all valid statuses.
`valid_reviewer_status`	A list of all valid reviewer statuses.
Build an issue
`make_proof()`	Make a proof of an issue
`publish_article()`	Publish an individual article
`publish_issue()`	Publish an issue
`publish_news()`	Publish a news article
Misc
`AEs()` `detect_AE()` `AE()` `is_AE()`	Associate editor (AE) functions
`actionable_articles()`	Show articles that require attention with the corresponding action
`address()`	An S3 class to represent email addresses.
`article()` `as.article()`	S3 class for article objects
`build_latex()`	Build article from LaTeX
`corr_author()`	Extract corresponding author from an article
`draft_acknowledge_submissions()`	Send submission acknowledgement drafts
`email_template()`	Send an email template.
`email_text()`	Generate an email template.
`filter_status()`	Find articles with a given status.
`future_ids()`	Generate a new id value.
`get_article_keywords()`	Extract keywords from a submitted article
`get_articles_path()`	Get the directory of the articles repository, either as set by set_articles_path() or using git to determine repository root
`get_md_from_pdf()`	Get metadata from a PDF file
`get_reviewer_keywords()`	Extract keywords from reviewer list
`git_user()`	Detect user name and e-mail from GIT
`invite_reviewers()` `invite_reviewer()`	Invite reviewer(s).
`new_id()`	Generate a new id value.
`online_metadata_for_article()`	Generate metadata for one article.
`parse_address_list()`	Parse a string into a rfc822 address list.
`get_accepted_articles()` `draft_proofing()` `proofing_article()` `proofing_article_text()`	Functions for proofing articles
`report()`	Generate a status report.
`rj`	R Journal Package
`set_articles_path()`	Set the directory of the articles repository
`article_status_plot()`	Generates a status plot for articles submitted in the last few years.
`time_to_accept_plot()`	Generates a plot of acceptance times for articles published in the last few years.

Reference

Primarily AE article management functions

Primarily Editor article management functions

Primarily Editor-in-Chief functions

Utilities

Build an issue

Misc