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Survomatic

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Version: 1.7.0.0
Result: ERROR
Check time: 2018-01-26 16:25
* using log directory ''
* using R Under development (unstable) (2018-01-26 r74168)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ISO8859-1
* using option '--as-cran'
* checking for file 'Survomatic/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Survomatic' version '1.7.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialized R objects in the sources ... OK
* checking whether package 'Survomatic' can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import 'survival::untangle.specials' by 'quantreg::untangle.specials' when loading 'Survomatic'
See '00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
'PLAN'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
print:
function(x, ...)
print.survomatic:
function(xx)

summary:
function(object, ...)
summary.survomatic:
function(xx)

plot:
function(x, ...)
plot.survomatic:
function(xx, what, col, lwd, lty, xlim)

See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.

Found the following apparent S3 methods exported but not registered:
plot.summary.crqs plot.survomatic print.survomatic summary.survomatic
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... WARNING
Found a .Internal call in the following function:
'opsurv'
with calls to .Internal functions
'optim'

Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.

In addition to the above warning(s), found the following notes:

NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File 'Survomatic/R/firstlib.R':
.First.lib calls:
cat(paste(packageDescription("Survomatic")[c("Package", "Version")], collapse = " "))
cat(" loaded\n")

Package startup functions should use 'packageStartupMessage' to
generate messages.
See section 'Good practice' in '?.onAttach'.

sigmods: warning in grep(paste("^", x$model, "$", sep = "", collapse =
"|"), colnames(cmat), val = T): partial argument match of 'val' to
'value'
.First.lib: no visible global function definition for
'packageDescription'
.First.lib: no visible global function definition for 'data'
.First.lib: no visible binding for global variable 'ctrl'
.First.lib: no visible binding for global variable 'dex'
.First.lib: no visible binding for global variable 'modelpars'
.First.lib: no visible binding for global variable 'dmodels'
cpars: no visible global function definition for 'pchisq'
empnull : : no visible global function definition for
't.test'
ezz: no visible global function definition for 'quantile'
fixpar: no visible binding for global variable 'rm.temp'
grf: no visible binding for global variable 'rm.temp'
grf2: no visible binding for global variable 'rm.temp'
loadlr: no visible global function definition for 'read.table'
mh: no visible global function definition for 'rbinom'
modelinfo: no visible binding for global variable 'simple'
modpars : : no visible global function definition for
'na.omit'
modpars: no visible global function definition for 'na.omit'
opsurv: no visible binding for '<<-' assignment to 'rm.temp'
opsurv: no visible binding for global variable 'rm.temp'
opsurv: no visible global function definition for 'optimHess'
plot.summary.crqs: no visible binding for global variable
'coefficients'
plot.summary.crqs: no visible global function definition for 'par'
plot.summary.crqs: no visible global function definition for 'plot'
plot.summary.crqs: no visible global function definition for 'title'
plot.summary.crqs: no visible global function definition for 'polygon'
plot.summary.crqs: no visible global function definition for 'points'
plot.summary.crqs: no visible global function definition for 'lines'
plot.summary.crqs: no visible global function definition for 'abline'
plotsurv: no visible binding for global variable 'lines'
plotsurv: no visible binding for global variable 'plot'
plotsurv.old: no visible global function definition for 'plot'
plotsurv.old: no visible global function definition for 'points'
qci: no visible global function definition for 'quantile'
sampler: no visible global function definition for 'txtProgressBar'
sampler: no visible global function definition for 'rnorm'
sampler: no visible global function definition for 'setTxtProgressBar'
sigmods: no visible global function definition for 'pchisq'
simsurv: no visible global function definition for 'rweibull'
simsurv: no visible global function definition for 'rexp'
smean: no visible global function definition for 'qnorm'
smoother: no visible binding for global variable 'smooth'
smoother: no visible global function definition for 'embed'
survexp: no visible global function definition for 'integrate'
survsumm: no visible global function definition for 'capture.output'
survsumm: no visible global function definition for 'p.adjust'
t4253h: no visible global function definition for 'embed'
t4253h: no visible binding for global variable 'median'
t4253h: no visible global function definition for 'median'
Undefined global functions or variables:
abline capture.output coefficients ctrl data dex dmodels embed
integrate lines median modelpars na.omit optimHess p.adjust
packageDescription par pchisq plot points polygon qnorm quantile
rbinom read.table rexp rm.temp rnorm rweibull setTxtProgressBar
simple smooth t.test title txtProgressBar
Consider adding
importFrom("graphics", "abline", "lines", "par", "plot", "points",
"polygon", "title")
importFrom("stats", "coefficients", "embed", "integrate", "median",
"na.omit", "optimHess", "p.adjust", "pchisq", "qnorm",
"quantile", "rbinom", "rexp", "rnorm", "rweibull", "smooth",
"t.test")
importFrom("utils", "capture.output", "data", "packageDescription",
"read.table", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.

Found the following assignments to the global environment:
File 'Survomatic/R/loadlr.R':
assign(i, read.table(i, header = header, sep = sep), envir = .GlobalEnv)
assign(paste(label, fpsuffix, sep = ""), get(input[1]), envir = .GlobalEnv)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'ezz.Rd':
\usage lines wider than 90 characters:
ezz(d, d2 = NULL, g, quant = 0.9, step = 0.01, thresh = 0.05, gnames = NULL, noob = F, thetas = c(0.05, 0.95), debug = F)

Rd file 'modelshow.Rd':
\usage lines wider than 90 characters:
modelshow(label, x = NULL, reload = F, k = 2, datacol = "LR", modelcol = "model", nullmodelcol = "null_model", chicol = "p (chi squared ... [TRUNCATED]

Rd file 'opsurv.Rd':
\usage lines wider than 90 characters:
opsurv(x, y = NULL, model = "g", par = c(2.6e-06, 0.004, 1e-07, 0.1), cons = 1, usegr = F, usehs = F, debug = F, lb = c(1e-14, 1e-04, 0 ... [TRUNCATED]

Rd file 'survwrapper.Rd':
\usage lines wider than 90 characters:
survwrapper(x, y = NULL, models = c("g", "gm", "l", "lm"), cx = rep(1, length(x)), cy = rep(1, length(y)), ext = F, n = length(c(x, y)) ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'ezz.Rd':
'survgui'

Missing link or links in documentation object 'modelshow.Rd':
'findpars' 'simdist'

Missing link or links in documentation object 'opsurv.Rd':
'findpars' 'objf'

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... WARNING
Undocumented code objects:
'checkcons' 'choosemodel' 'cpars' 'demog' 'empnull' 'fitmods'
'fixpar' 'gmean' 'grf' 'grf2' 'loadlr' 'mh' 'mledrv' 'modelinfo'
'modpars' 'objf' 'plot.summary.crqs' 'plot.survomatic' 'plotsurv'
'plotsurv.old' 'print.survomatic' 'qci' 'qsrv' 'sampler' 'sigmods'
'simsurv' 'smean' 'smoother' 'srvhaz' 'srvshp' 'summary.survomatic'
'survexp' 'survsumm' 't4253h' 'tab2raw' 'tidyfits' 'trypars'
'weibhaz' 'zpprob' 'zpprob.compiled' 'zptest'
Undocumented data sets:
'ctrl' 'demo1' 'demo2' 'dex' 'dmodels' 'modelpars' '.models'
'references'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... WARNING
Functions or methods with usage in documentation object 'modelshow' but not in code:
modelshow

Codoc mismatches from documentation object 'ezz':
ezz
Code: function(d, d2 = NULL, g, c1 = NULL, c2 = NULL, quant = 0.9,
step = 0.01, thresh = 0.05, gnames = NULL, noob = F,
thetas = c(0.05, 0.95), debug = F, silent = F)
Docs: function(d, d2 = NULL, g, quant = 0.9, step = 0.01, thresh =
0.05, gnames = NULL, noob = F, thetas = c(0.05, 0.95),
debug = F)
Argument names in code not in docs:
c1 c2 silent
Mismatches in argument names (first 3):
Position: 4 Code: c1 Docs: quant
Position: 5 Code: c2 Docs: step
Position: 6 Code: quant Docs: thresh

Codoc mismatches from documentation object 'opsurv':
opsurv
Code: function(x, y = 0, model = c("w", "g", "gm", "l", "lm"), par =
c(2.6e-06, 0.004, 1e-07, 0.1), cons = 1, usegr = F,
usehs = F, debug = F, lb = c(1e-14, 1e-04, 0, 0), ub =
c(0.5, 0.5, 0.5, 2), cx = NULL, cy = NULL, giveup =
Inf, mvers = "", method = "Nelder-Mead", tlog = F,
getses = F, verbose = 0)
Docs: function(x, y = NULL, model = "g", par = c(2.6e-06, 0.004,
1e-07, 0.1), cons = 1, usegr = F, usehs = F, debug =
F, lb = c(1e-14, 1e-04, 0, 0), ub = c(0.5, 0.5, 0.5,
2), cx = NULL, cy = NULL, mvers = "", method =
"Nelder-Mead", tlog = F)
Argument names in code not in docs:
giveup getses verbose
Mismatches in argument names:
Position: 13 Code: giveup Docs: mvers
Position: 14 Code: mvers Docs: method
Position: 15 Code: method Docs: tlog
Mismatches in argument default values:
Name: 'y' Code: 0 Docs: NULL
Name: 'model' Code: c("w", "g", "gm", "l", "lm") Docs: "g"

Codoc mismatches from documentation object 'survwrapper':
survwrapper
Code: function(x, y = NULL, cx = rep(1, length(x)), cy = rep(1,
length(y)), forcemodel = NULL, ext = F, n =
length(c(x, y)), AIC = F, BIC = F, breakties = "AIC",
compare.matrix = NULL, constraint.matrix = NULL,
thresh = 0.05, smooth = 7)
Docs: function(x, y = NULL, models = c("g", "gm", "l", "lm"), cx =
rep(1, length(x)), cy = rep(1, length(y)), ext = F, n
= length(c(x, y)), AIC = F, BIC = F, breakties =
"AIC", compare.matrix = NULL, constraint.matrix =
NULL, thresh = 0.05, smooth = 7)
Argument names in code not in docs:
forcemodel
Argument names in docs not in code:
models
Mismatches in argument names:
Position: 3 Code: cx Docs: models
Position: 4 Code: cy Docs: cx
Position: 5 Code: forcemodel Docs: cy

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... NOTE
File 'Survomatic/libs/Survomatic.so':
Found 'printf', possibly from 'printf' (C)
Object: 'ezz.o'
Found 'putchar', possibly from 'putchar' (C)
Object: 'ezz.o'
Found 'puts', possibly from 'printf' (C), 'puts' (C)
Object: 'haz.o'
Found 'rand', possibly from 'rand' (C)
Object: 'haz.o'
File 'Survomatic/libs/Survomatic.so':
Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.
It is good practice to register native routines and to disable symbol
search.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ... ERROR
Running examples in 'Survomatic-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: survwrapper
> ### Title: Function for fitting and selecting hazard functions to survival
> ### data.
> ### Aliases: survwrapper
> ### Keywords: survival ~kwd1 ~kwd2
>
> ### ** Examples
>
> ## Generate two sets of survival times.
> population1 <- simsurv(629,type='g',p=c(7.33e-4,0.1227,0,0));
> population2 <-
+ simsurv(574,type='lm',p=c(5.4818e-5,0.1543,0.0023,0.6018));
Error in .C("simsurv", a = as.double(p[1]), b = as.double(p[2]), c = as.double(p[3]), :
"simsurv" not available for .C() for package "Survomatic"
Calls: simsurv
Execution halted
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 6 WARNINGs, 4 NOTEs
See
'/00check.log'
for details.


Installation log: 00install.out

Distribution log

SVN checkout/GIT clone log


Build log for Windows (R 2.11.x)

* checking for file 'Survomatic/DESCRIPTION' ... OK
* preparing 'Survomatic':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building binary distribution
WARNING: some HTML links may not be found
* installing *source* package 'Survomatic' ...
** libs
making DLL ...
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -O3 -Wall -std=gnu99 -c ezz.c -o ezz.o
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -O3 -Wall -std=gnu99 -c haz.c -o haz.o
haz.c: In function 'gl':
haz.c:129: warning: unused variable 'sumc'
haz.c: In function 'lmsrv2':
haz.c:181: warning: unused variable 'denom'
haz.c:180: warning: unused variable 'expcx'
haz.c: In function 'srvshp':
haz.c:187: warning: unused variable 'surv'
haz.c: In function 'zptest':
haz.c:228: warning: unused variable 'denom'
haz.c: In function 'ggm':
haz.c:112: warning: 'sumc' may be used uninitialized in this function
haz.c:112: warning: 'sumb' may be used uninitialized in this function
haz.c:112: warning: 'suma' may be used uninitialized in this function
haz.c: In function 'gg':
haz.c:96: warning: 'sumb' may be used uninitialized in this function
haz.c:96: warning: 'suma' may be used uninitialized in this function
haz.c: In function 'glm':
haz.c:150: warning: 'sums' may be used uninitialized in this function
haz.c:150: warning: 'sumc' may be used uninitialized in this function
haz.c:150: warning: 'sumb' may be used uninitialized in this function
haz.c:150: warning: 'suma' may be used uninitialized in this function
haz.c: In function 'gl':
haz.c:129: warning: 'sums' may be used uninitialized in this function
haz.c:129: warning: 'sumb' may be used uninitialized in this function
haz.c:129: warning: 'suma' may be used uninitialized in this function
haz.c: In function 'gw':
haz.c:79: warning: 'sumb' may be used uninitialized in this function
haz.c:79: warning: 'suma' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o Survomatic.dll tmp.def ezz.o haz.o -Lc:/PROGRA~1/r/R-211~1.0/bin -lR
installing to c:/tmp/Rinst228466799/Survomatic/libs
... done
** R
** data
** preparing package for lazy loading
Loading required package: splines
Warning: package 'quantreg' was built under R version 2.11.1
Loading required package: SparseM
Package SparseM (0.85) loaded.
To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

backsolve


Attaching package: 'quantreg'

The following object(s) are masked from 'package:survival':

untangle.specials

The following object(s) are masked from 'package:utils':

vignette

** help
*** installing help indices
** building package indices ...
** MD5 sums
** testing if installed package can be loaded
Survomatic 1.4.0.0 loaded
packaged installation of 'Survomatic' as Survomatic_1.4.0.0.zip

* DONE (Survomatic)


Build log for Windows 64-bit (R 2.11.x)

* checking for file 'Survomatic/DESCRIPTION' ... OK
* preparing 'Survomatic':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building binary distribution
WARNING: some HTML links may not be found
* installing *source* package 'Survomatic' ...
** libs
making DLL ...
x86_64-w64-mingw32-gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -O2 -Wall -gdwarf-2 -std=gnu99 -c ezz.c -o ezz.o
x86_64-w64-mingw32-gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -O2 -Wall -gdwarf-2 -std=gnu99 -c haz.c -o haz.o
haz.c: In function 'gl':
haz.c:129:21: warning: unused variable 'sumc'
haz.c: In function 'lmsrv2':
haz.c:181:9: warning: unused variable 'denom'
haz.c:180:63: warning: unused variable 'expcx'
haz.c: In function 'srvshp':
haz.c:187:24: warning: unused variable 'surv'
haz.c: In function 'zptest':
haz.c:228:16: warning: unused variable 'denom'
haz.c: In function 'gw':
haz.c:79:9: warning: 'suma' may be used uninitialized in this function
haz.c:79:22: warning: 'sumb' may be used uninitialized in this function
haz.c: In function 'gg':
haz.c:96:9: warning: 'suma' may be used uninitialized in this function
haz.c:96:22: warning: 'sumb' may be used uninitialized in this function
haz.c: In function 'ggm':
haz.c:112:9: warning: 'suma' may be used uninitialized in this function
haz.c:112:22: warning: 'sumb' may be used uninitialized in this function
haz.c:112:35: warning: 'sumc' may be used uninitialized in this function
haz.c: In function 'gl':
haz.c:129:9: warning: 'suma' may be used uninitialized in this function
haz.c:129:15: warning: 'sumb' may be used uninitialized in this function
haz.c:129:27: warning: 'sums' may be used uninitialized in this function
haz.c: In function 'glm':
haz.c:150:9: warning: 'suma' may be used uninitialized in this function
haz.c:150:22: warning: 'sumb' may be used uninitialized in this function
haz.c:150:35: warning: 'sumc' may be used uninitialized in this function
haz.c:150:48: warning: 'sums' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -shared -static-libgcc -o Survomatic.dll tmp.def ezz.o haz.o -Lc:/PROGRA~1/r/R-211~1.0-X/bin -lR
installing to c:/tmp/Rinst80492791/Survomatic/libs/x64
... done
** R
** data
** preparing package for lazy loading
Loading required package: splines
Warning: package 'quantreg' was built under R version 2.11.1
Loading required package: SparseM
Package SparseM (0.85) loaded.
To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

backsolve


Attaching package: 'quantreg'

The following object(s) are masked from 'package:survival':

untangle.specials

The following object(s) are masked from 'package:utils':

vignette

** help
*** installing help indices
** building package indices ...
** MD5 sums
** testing if installed package can be loaded
Survomatic 1.4.0.0 loaded
packaged installation of 'Survomatic' as Survomatic_1.4.0.0.zip

* DONE (Survomatic)


Build log for Mac OS X 10.5 (R 2.16.x)

ERROR: dependencies 'quantreg', 'eha' are not available for package 'Survomatic'
* removing '/Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/Survomatic'

Build log for Windows 7 (R 3.0.x)

(Survomatic 1.7.0.0)
* installing to library 'z:/rforge/Rlib/win7-3.0'
* installing *source* package 'Survomatic' ...
** libs

*** arch - i386
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ezz.c -o ezz.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c haz.c -o haz.o
haz.c: In function 'gl':
haz.c:129:21: warning: unused variable 'sumc' [-Wunused-variable]
haz.c: In function 'lmsrv2':
haz.c:181:9: warning: unused variable 'denom' [-Wunused-variable]
haz.c:180:63: warning: unused variable 'expcx' [-Wunused-variable]
haz.c: In function 'srvshp':
haz.c:187:24: warning: unused variable 'surv' [-Wunused-variable]
haz.c: In function 'zptest':
haz.c:228:16: warning: unused variable 'denom' [-Wunused-variable]
haz.c: In function 'gw':
haz.c:89:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:89:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'gg':
haz.c:106:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:106:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'ggm':
haz.c:124:39: warning: 'sumc' may be used uninitialized in this function [-Wuninitialized]
haz.c:124:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:124:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'gl':
haz.c:144:39: warning: 'sums' may be used uninitialized in this function [-Wuninitialized]
haz.c:144:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:144:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'glm':
haz.c:171:54: warning: 'sums' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:39: warning: 'sumc' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -shared -s -static-libgcc -o Survomatic.dll tmp.def ezz.o haz.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/i386 -lR
installing to z:/rforge/Rlib/win7-3.0/Survomatic/libs/i386

*** arch - x64
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ezz.c -o ezz.o
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c haz.c -o haz.o
haz.c: In function 'gl':
haz.c:129:21: warning: unused variable 'sumc' [-Wunused-variable]
haz.c: In function 'lmsrv2':
haz.c:181:9: warning: unused variable 'denom' [-Wunused-variable]
haz.c:180:63: warning: unused variable 'expcx' [-Wunused-variable]
haz.c: In function 'srvshp':
haz.c:187:24: warning: unused variable 'surv' [-Wunused-variable]
haz.c: In function 'zptest':
haz.c:228:16: warning: unused variable 'denom' [-Wunused-variable]
haz.c: In function 'gw':
haz.c:89:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:89:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'gg':
haz.c:106:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:106:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'ggm':
haz.c:124:39: warning: 'sumc' may be used uninitialized in this function [-Wuninitialized]
haz.c:124:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:124:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'gl':
haz.c:144:39: warning: 'sums' may be used uninitialized in this function [-Wuninitialized]
haz.c:144:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:144:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'glm':
haz.c:171:54: warning: 'sums' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:39: warning: 'sumc' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -shared -s -static-libgcc -o Survomatic.dll tmp.def ezz.o haz.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/x64 -lR
installing to z:/rforge/Rlib/win7-3.0/Survomatic/libs/x64
** R
** data
** preparing package for lazy loading
Warning: replacing previous import 'untangle.specials' when loading 'quantreg'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
*** arch - i386
Warning: replacing previous import 'untangle.specials' when loading 'quantreg'
Warning: ignoring .First.lib() for package 'Survomatic'
*** arch - x64
Warning: replacing previous import 'untangle.specials' when loading 'quantreg'
Warning: ignoring .First.lib() for package 'Survomatic'
* MD5 sums
packaged installation of 'Survomatic' as Survomatic_1.7.0.0.zip
* DONE (Survomatic)