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Survomatic

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Version: 1.7.0.0
Result: ERROR
Check time: 2014-03-29 15:34

Distribution log

--- running R CMD build for Survomatic (project Survomatic)
* checking for file ‘Survomatic/DESCRIPTION’ ... OK
* preparing ‘Survomatic’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* creating default NAMESPACE file
* building ‘Survomatic_1.7.0.0.tar.gz’

Distribution log

SVN checkout/GIT clone log


Build log for Windows (R 2.11.x)

* checking for file 'Survomatic/DESCRIPTION' ... OK
* preparing 'Survomatic':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building binary distribution
WARNING: some HTML links may not be found
* installing *source* package 'Survomatic' ...
** libs
making DLL ...
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -O3 -Wall -std=gnu99 -c ezz.c -o ezz.o
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -O3 -Wall -std=gnu99 -c haz.c -o haz.o
haz.c: In function 'gl':
haz.c:129: warning: unused variable 'sumc'
haz.c: In function 'lmsrv2':
haz.c:181: warning: unused variable 'denom'
haz.c:180: warning: unused variable 'expcx'
haz.c: In function 'srvshp':
haz.c:187: warning: unused variable 'surv'
haz.c: In function 'zptest':
haz.c:228: warning: unused variable 'denom'
haz.c: In function 'ggm':
haz.c:112: warning: 'sumc' may be used uninitialized in this function
haz.c:112: warning: 'sumb' may be used uninitialized in this function
haz.c:112: warning: 'suma' may be used uninitialized in this function
haz.c: In function 'gg':
haz.c:96: warning: 'sumb' may be used uninitialized in this function
haz.c:96: warning: 'suma' may be used uninitialized in this function
haz.c: In function 'glm':
haz.c:150: warning: 'sums' may be used uninitialized in this function
haz.c:150: warning: 'sumc' may be used uninitialized in this function
haz.c:150: warning: 'sumb' may be used uninitialized in this function
haz.c:150: warning: 'suma' may be used uninitialized in this function
haz.c: In function 'gl':
haz.c:129: warning: 'sums' may be used uninitialized in this function
haz.c:129: warning: 'sumb' may be used uninitialized in this function
haz.c:129: warning: 'suma' may be used uninitialized in this function
haz.c: In function 'gw':
haz.c:79: warning: 'sumb' may be used uninitialized in this function
haz.c:79: warning: 'suma' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o Survomatic.dll tmp.def ezz.o haz.o -Lc:/PROGRA~1/r/R-211~1.0/bin -lR
installing to c:/tmp/Rinst228466799/Survomatic/libs
... done
** R
** data
** preparing package for lazy loading
Loading required package: splines
Warning: package 'quantreg' was built under R version 2.11.1
Loading required package: SparseM
Package SparseM (0.85) loaded.
To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

backsolve


Attaching package: 'quantreg'

The following object(s) are masked from 'package:survival':

untangle.specials

The following object(s) are masked from 'package:utils':

vignette

** help
*** installing help indices
** building package indices ...
** MD5 sums
** testing if installed package can be loaded
Survomatic 1.4.0.0 loaded
packaged installation of 'Survomatic' as Survomatic_1.4.0.0.zip

* DONE (Survomatic)


Build log for Windows 64-bit (R 2.11.x)

* checking for file 'Survomatic/DESCRIPTION' ... OK
* preparing 'Survomatic':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building binary distribution
WARNING: some HTML links may not be found
* installing *source* package 'Survomatic' ...
** libs
making DLL ...
x86_64-w64-mingw32-gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -O2 -Wall -gdwarf-2 -std=gnu99 -c ezz.c -o ezz.o
x86_64-w64-mingw32-gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -O2 -Wall -gdwarf-2 -std=gnu99 -c haz.c -o haz.o
haz.c: In function 'gl':
haz.c:129:21: warning: unused variable 'sumc'
haz.c: In function 'lmsrv2':
haz.c:181:9: warning: unused variable 'denom'
haz.c:180:63: warning: unused variable 'expcx'
haz.c: In function 'srvshp':
haz.c:187:24: warning: unused variable 'surv'
haz.c: In function 'zptest':
haz.c:228:16: warning: unused variable 'denom'
haz.c: In function 'gw':
haz.c:79:9: warning: 'suma' may be used uninitialized in this function
haz.c:79:22: warning: 'sumb' may be used uninitialized in this function
haz.c: In function 'gg':
haz.c:96:9: warning: 'suma' may be used uninitialized in this function
haz.c:96:22: warning: 'sumb' may be used uninitialized in this function
haz.c: In function 'ggm':
haz.c:112:9: warning: 'suma' may be used uninitialized in this function
haz.c:112:22: warning: 'sumb' may be used uninitialized in this function
haz.c:112:35: warning: 'sumc' may be used uninitialized in this function
haz.c: In function 'gl':
haz.c:129:9: warning: 'suma' may be used uninitialized in this function
haz.c:129:15: warning: 'sumb' may be used uninitialized in this function
haz.c:129:27: warning: 'sums' may be used uninitialized in this function
haz.c: In function 'glm':
haz.c:150:9: warning: 'suma' may be used uninitialized in this function
haz.c:150:22: warning: 'sumb' may be used uninitialized in this function
haz.c:150:35: warning: 'sumc' may be used uninitialized in this function
haz.c:150:48: warning: 'sums' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -shared -static-libgcc -o Survomatic.dll tmp.def ezz.o haz.o -Lc:/PROGRA~1/r/R-211~1.0-X/bin -lR
installing to c:/tmp/Rinst80492791/Survomatic/libs/x64
... done
** R
** data
** preparing package for lazy loading
Loading required package: splines
Warning: package 'quantreg' was built under R version 2.11.1
Loading required package: SparseM
Package SparseM (0.85) loaded.
To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

backsolve


Attaching package: 'quantreg'

The following object(s) are masked from 'package:survival':

untangle.specials

The following object(s) are masked from 'package:utils':

vignette

** help
*** installing help indices
** building package indices ...
** MD5 sums
** testing if installed package can be loaded
Survomatic 1.4.0.0 loaded
packaged installation of 'Survomatic' as Survomatic_1.4.0.0.zip

* DONE (Survomatic)


Build log for Mac OS X 10.5 (R 2.16.x)

ERROR: dependencies 'quantreg', 'eha' are not available for package 'Survomatic'
* removing '/Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/Survomatic'

Build log for Windows 7 (R 3.0.x)

(Survomatic 1.7.0.0)
* installing to library 'z:/rforge/Rlib/win7-3.0'
* installing *source* package 'Survomatic' ...
** libs

*** arch - i386
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ezz.c -o ezz.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c haz.c -o haz.o
haz.c: In function 'gl':
haz.c:129:21: warning: unused variable 'sumc' [-Wunused-variable]
haz.c: In function 'lmsrv2':
haz.c:181:9: warning: unused variable 'denom' [-Wunused-variable]
haz.c:180:63: warning: unused variable 'expcx' [-Wunused-variable]
haz.c: In function 'srvshp':
haz.c:187:24: warning: unused variable 'surv' [-Wunused-variable]
haz.c: In function 'zptest':
haz.c:228:16: warning: unused variable 'denom' [-Wunused-variable]
haz.c: In function 'gw':
haz.c:89:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:89:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'gg':
haz.c:106:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:106:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'ggm':
haz.c:124:39: warning: 'sumc' may be used uninitialized in this function [-Wuninitialized]
haz.c:124:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:124:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'gl':
haz.c:144:39: warning: 'sums' may be used uninitialized in this function [-Wuninitialized]
haz.c:144:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:144:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'glm':
haz.c:171:54: warning: 'sums' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:39: warning: 'sumc' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -shared -s -static-libgcc -o Survomatic.dll tmp.def ezz.o haz.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/i386 -lR
installing to z:/rforge/Rlib/win7-3.0/Survomatic/libs/i386

*** arch - x64
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ezz.c -o ezz.o
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c haz.c -o haz.o
haz.c: In function 'gl':
haz.c:129:21: warning: unused variable 'sumc' [-Wunused-variable]
haz.c: In function 'lmsrv2':
haz.c:181:9: warning: unused variable 'denom' [-Wunused-variable]
haz.c:180:63: warning: unused variable 'expcx' [-Wunused-variable]
haz.c: In function 'srvshp':
haz.c:187:24: warning: unused variable 'surv' [-Wunused-variable]
haz.c: In function 'zptest':
haz.c:228:16: warning: unused variable 'denom' [-Wunused-variable]
haz.c: In function 'gw':
haz.c:89:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:89:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'gg':
haz.c:106:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:106:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'ggm':
haz.c:124:39: warning: 'sumc' may be used uninitialized in this function [-Wuninitialized]
haz.c:124:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:124:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'gl':
haz.c:144:39: warning: 'sums' may be used uninitialized in this function [-Wuninitialized]
haz.c:144:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:144:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
haz.c: In function 'glm':
haz.c:171:54: warning: 'sums' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:39: warning: 'sumc' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:24: warning: 'sumb' may be used uninitialized in this function [-Wuninitialized]
haz.c:171:9: warning: 'suma' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -shared -s -static-libgcc -o Survomatic.dll tmp.def ezz.o haz.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/x64 -lR
installing to z:/rforge/Rlib/win7-3.0/Survomatic/libs/x64
** R
** data
** preparing package for lazy loading
Warning: replacing previous import 'untangle.specials' when loading 'quantreg'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
*** arch - i386
Warning: replacing previous import 'untangle.specials' when loading 'quantreg'
Warning: ignoring .First.lib() for package 'Survomatic'
*** arch - x64
Warning: replacing previous import 'untangle.specials' when loading 'quantreg'
Warning: ignoring .First.lib() for package 'Survomatic'
* MD5 sums
packaged installation of 'Survomatic' as Survomatic_1.7.0.0.zip
* DONE (Survomatic)