DATRAS - The DATRAS library contains functions for reading and manipulating trawl survey data from the DATRAS database (datras.ices.dk) - check results
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DATRAS

Tutorial
About DATRAS
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Package R docs

Version: 1.0
Result: OK
Check time: 2016-10-06 06:17
* using log directory ''
* using R version 3.3.1 Patched (2016-10-05 r71456)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ISO8859-1
* checking for file 'DATRAS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DATRAS' version '1.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages suggested but not available for checking: 'mapdata' 'maptools'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'DATRAS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
'mapdata' 'maps' 'maptools' 'mgcv' 'multicore'
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
AIC.ALKmodel : myll: no visible global function definition for 'logLik'
NageByHaul: no visible binding for global variable 'as.formula'
NageByHaul: no visible global function definition for 'predict'
addExtraVariables: no visible global function definition for 'read.csv'
addExtraVariables : mytransform: no visible binding for global variable
'LngtCode'
addExtraVariables : mytransform: no visible binding for global variable
'SpecCodeType'
addExtraVariables : mytransform: no visible binding for global variable
'SpecCode'
addExtraVariables: no visible binding for global variable 'Year'
addExtraVariables: no visible binding for global variable 'Month'
addExtraVariables: no visible binding for global variable 'Day'
addExtraVariables: no visible binding for global variable 'ShootLong'
addExtraVariables: no visible binding for global variable 'ShootLat'
addExtraVariables: no visible global function definition for
'read.table'
addNage: no visible global function definition for 'predict'
addSpatialData: no visible global function definition for
'readShapeSpatial'
addSpatialData: no visible global function definition for
'complete.cases'
addSpatialData: no visible global function definition for
'coordinates<-'
addSpatialData: no visible global function definition for 'over'
addSpectrum: no visible binding for global variable 'DataType'
addSpectrum: no visible global function definition for 'xtabs'
addWeightByHaul: no visible global function definition for 'lm'
addWeightByHaul: no visible binding for global variable 'IndWgt'
addWeightByHaul: no visible global function definition for 'predict'
anova.ALKmodel : myll: no visible global function definition for
'logLik'
anova.ALKmodel: no visible global function definition for 'pchisq'
bubblePlot: no visible global function definition for 'plot'
bubblePlot: no visible global function definition for 'map'
bubblePlot: no visible global function definition for 'grey'
bubblePlot: no visible global function definition for 'points'
bubblePlot: no visible binding for global variable 'resp.var'
fitALK: no visible binding for global variable 'as.formula'
fitALK: no visible binding for global variable 'Year'
fitALK: no visible binding for global variable 'Age'
fitALK: no visible binding for global variable 'LngtCm'
fitALK : mylapply: no visible global function definition for 'mclapply'
fitALKone: no visible global function definition for 'as.formula'
fitALKone: no visible binding for global variable 'Age'
fitALKone: no visible global function definition for 'gam'
fitALKone: no visible binding for global variable 'NoAtALK'
fitvbg: no visible global function definition for 'coef'
fitvbg: no visible global function definition for 'lm'
fitvbg: no visible global function definition for 'nls'
fitvbg: no visible global function definition for 'predict'
fitvbg: no visible global function definition for 'lines'
getAccuracyCM: no visible global function definition for 'na.omit'
icesSquare: no visible global function definition for 'head'
icesSquare2coord: no visible global function definition for 'head'
plot.DATRASraw: no visible global function definition for 'plot'
plot.DATRASraw: no visible global function definition for 'polygon'
plot.DATRASraw: no visible global function definition for 'text'
plot.DATRASraw: no visible global function definition for 'points'
plot.DATRASraw: no visible global function definition for 'map'
plot.DATRASraw : plotfun: no visible global function definition for
'points'
plotALKfit: no visible global function definition for 'matplot'
plotALKraw: no visible global function definition for 'xtabs'
plotALKraw: no visible global function definition for 'matplot'
plotVBG: no visible binding for global variable 'Year'
plotVBG: no visible binding for global variable 'Quarter'
plotVBG: no visible global function definition for 'grey'
plotVBG: no visible global function definition for 'plot.new'
plotVBG: no visible global function definition for 'par'
plotVBG: no visible global function definition for 'axis'
plotVBG: no visible global function definition for 'mtext'
plotVBG: no visible global function definition for 'box'
plotVBG: no visible global function definition for 'plot'
plotVBG: no visible global function definition for 'approxfun'
plotVBG: no visible global function definition for 'polygon'
plotVBG: no visible global function definition for 'lines'
points.DATRASraw: no visible global function definition for 'plot'
predict.ALKmodel : mylapply: no visible global function definition for
'mclapply'
rawALK: no visible global function definition for 'xtabs'
rawALK: no visible binding for global variable 'Age'
readExchange: no visible global function definition for 'unzip'
readICES : : no visible global function definition for
'read.csv'
summary.DATRASraw: no visible global function definition for 'xtabs'
tilePlot: no visible global function definition for 'par'
weightAtAge: no visible global function definition for 'predict'
weightAtAge: no visible global function definition for 'lm'
Undefined global functions or variables:
Age DataType Day IndWgt LngtCm LngtCode Month NoAtALK Quarter
ShootLat ShootLong SpecCode SpecCodeType Year approxfun as.formula
axis box coef complete.cases coordinates<- gam grey head lines lm
logLik map matplot mclapply mtext na.omit nls over par pchisq plot
plot.new points polygon predict read.csv read.table readShapeSpatial
resp.var text unzip xtabs
Consider adding
importFrom("grDevices", "grey")
importFrom("graphics", "axis", "box", "lines", "matplot", "mtext",
"par", "plot", "plot.new", "points", "polygon", "text")
importFrom("stats", "approxfun", "as.formula", "coef",
"complete.cases", "lm", "logLik", "na.omit", "nls",
"pchisq", "predict", "xtabs")
importFrom("utils", "head", "read.csv", "read.table", "unzip")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
'/00check.log'
for details.



Installation log: 00install.out

Distribution log

SVN checkout/GIT clone log


Build log for Windows 7 (R 3.0.x)

(DATRAS 1.0)
* installing to library 'z:/rforge/Rlib/win7-3.0'
* installing *source* package 'DATRAS' ...
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* MD5 sums
packaged installation of 'DATRAS' as DATRAS_1.0.zip
* DONE (DATRAS)