CADStat - Provides a GUI to several statistical methods for making biological inferences - check results
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CADStat

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Version: 2.2-5
Result: ERROR
Check time: 2014-03-29 14:07
* using log directory ''
* using R Under development (unstable) (2014-03-29 r65336)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: ISO8859-1
* checking for file 'CADStat/DESCRIPTION' ... OK
* this is package 'CADStat' version '2.2-5'
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'bio.infer' 'gmodels'

Depends: includes the non-default packages:
'JGR' 'XML' 'lattice' 'bio.infer' 'gdata' 'gmodels' 'car' 'MASS'
'quantreg' 'rpart' 'rJava'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.

Distribution log

SVN checkout/GIT clone log


Build log for Windows (R 2.11.x)

* checking for file 'CADStat/DESCRIPTION' ... OK
* preparing 'CADStat':
* checking DESCRIPTION meta-information ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building binary distribution
WARNING: some HTML links may not be found
* installing *source* package 'CADStat' ...

Using auto-selected zip option '--use-zip-data'

** R
** data
** inst
** preparing package for lazy loading
Loading required package: rJava
Loading required package: JavaGD
Loading required package: iplots

Please use the corresponding JGR launcher to start JGR.
Run JGR() for details. You can also use JGR(update=TRUE) to update JGR.

Warning in library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
there is no package called 'XML'
Error : package 'XML' could not be loaded
ERROR: lazy loading failed for package 'CADStat'
* removing 'c:/tmp/Rinst59222225/CADStat'
ERROR
* installation failed


Build log for Windows 64-bit (R 2.11.x)

* checking for file 'CADStat/DESCRIPTION' ... OK
* preparing 'CADStat':
* checking DESCRIPTION meta-information ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building binary distribution
WARNING: some HTML links may not be found
* installing *source* package 'CADStat' ...

Using auto-selected zip option '--use-zip-data'

** R
** data
** inst
** preparing package for lazy loading
Loading required package: rJava
Loading required package: JavaGD
Loading required package: iplots

Please use the corresponding JGR launcher to start JGR.
Run JGR() for details. You can also use JGR(update=TRUE) to update JGR.

Warning in library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
there is no package called 'XML'
Error : package 'XML' could not be loaded
ERROR: lazy loading failed for package 'CADStat'
* removing 'c:/tmp/Rinst215684982/CADStat'
ERROR
* installation failed


Build log for Mac OS X 10.5 (R 2.16.x)

ERROR: dependencies 'JGR', 'XML', 'bio.infer', 'gdata', 'gmodels', 'car', 'quantreg' are not available for package 'CADStat'
* removing '/Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/CADStat'

Build log for Windows 7 (R 3.0.x)

(CADStat 2.2-5)
* installing to library 'z:/rforge/Rlib/win7-3.0'
* installing *source* package 'CADStat' ...
** R
** data
** inst
** preparing package for lazy loading
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
Warning: ignoring .First.lib() for package 'CADStat'
*** arch - x64
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
Warning: ignoring .First.lib() for package 'CADStat'
* MD5 sums
packaged installation of 'CADStat' as CADStat_2.2-5.zip
* DONE (CADStat)