CADStat - Provides a GUI to several statistical methods for making biological inferences - check results
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CADStat

About CADStat
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Check results

Version: 2.2-5
Result: ERROR
Check time: 2014-03-29 14:07

SVN checkout/GIT clone log

A CADStat/R
A CADStat/R/buildresultsXML.R
A CADStat/R/rq.JGR.R
A CADStat/R/CADStat.update.R
A CADStat/R/cor.JGR.R
A CADStat/R/scatterplot2.JGR.R
A CADStat/R/conditionalprob.JGR.R
A CADStat/R/pca.fa.JGR.R
A CADStat/R/rpart.JGR.R
A CADStat/R/CADStat.help.R
A CADStat/R/datamerge.JGR.R
A CADStat/R/bioinfer.JGR.R
A CADStat/R/gisdt.subset.R
A CADStat/R/docbook.R
A CADStat/R/scatterplot2.R
A CADStat/R/common.R
A CADStat/R/glm.pred.JGR.R
A CADStat/R/bxplot.JGR.R
A CADStat/R/zzz.R
A CADStat/R/JGRMessageBox.R
A CADStat/R/glm.JGR.R
A CADStat/.Rbuildignore
A CADStat/DESCRIPTION
A CADStat/.project
A CADStat/data
A CADStat/data/eptpctfn.txt
A CADStat/data/benthicCount.txt
A CADStat/data/forTest
A CADStat/data/forTest/datatest1.txt
A CADStat/data/forTest/datatest2.txt
A CADStat/data/forTest/datatest3.txt
A CADStat/data/forTest/emapdata.txt
A CADStat/data/forTest/datatest4.txt
A CADStat/data/refids.or.txt
A CADStat/data/fish.lwr.txt
A CADStat/data/envdata.or.txt
A CADStat/man
A CADStat/man/glm.JGR.Rd
A CADStat/man/docbook.hmtestp.Rd
A CADStat/man/CADStat.update.Rd
A CADStat/man/bioinfer.new.JGR.Rd
A CADStat/man/localJGRError.Rd
A CADStat/man/condprob.fn.Rd
A CADStat/man/resample.Rd
A CADStat/man/rpart.JGR.Rd
A CADStat/man/pca.fa.JGR.Rd
A CADStat/man/setVisible.Rd
A CADStat/man/CADStat.help.Rd
A CADStat/man/browseHelp.Rd
A CADStat/man/gisdt.subset.Rd
A CADStat/man/rq.plot.JGR.Rd
A CADStat/man/docbook.lm.summary.Rd
A CADStat/man/genResultSpace.Rd
A CADStat/man/scatterplot2.Rd
A CADStat/man/docbook.lm.Rd
A CADStat/man/docbook.glm.summary.Rd
A CADStat/man/docbook.try.Rd
A CADStat/man/docbook.glm.Rd
A CADStat/man/JGRMessageBox.Rd
A CADStat/man/buildresultsXML.Rd
A CADStat/man/docbook.default.Rd
A CADStat/man/jgr.removeMenu.Rd
A CADStat/man/rq.JGR.Rd
A CADStat/man/cor.JGR.Rd
A CADStat/man/cleanCADStatWorkspace.Rd
A CADStat/man/load.menus.Rd
A CADStat/man/docbook.htest.Rd
A CADStat/man/scatterplot2.JGR.Rd
A CADStat/man/conditionalprob.JGR.Rd
A CADStat/man/condprob.impute.Rd
A CADStat/man/datamerge.JGR.Rd
A CADStat/man/bioinfer.JGR.Rd
A CADStat/man/docbook.Rd
A CADStat/man/docbook.data.frame.Rd
A CADStat/man/load.class.Rd
A CADStat/man/bxplot.JGR.Rd
A CADStat/man/glm.pred.JGR.Rd
A CADStat/man/text.rpart.JGR.Rd
A CADStat/NEWS
A CADStat/version.number
A CADStat/inst
A CADStat/inst/doc
A CADStat/inst/doc/trait.stat.JGR.html
A CADStat/inst/doc/boxplot.JGR-img1.png
A CADStat/inst/doc/boxplot.JGR-img2.png
A CADStat/inst/doc/cor.JGR.odt
A CADStat/inst/doc/pca.fa.JGR_html_m5798ce7b.png
A CADStat/inst/doc/rpart.JGR.odt
A CADStat/inst/doc/pca.fa.JGR.odt
A CADStat/inst/doc/bioinfer.JGR.odt
A CADStat/inst/doc/cor.JGR.html
A CADStat/inst/doc/lm.JGR.odt
A CADStat/inst/doc/cor.JGR-img1.png
A CADStat/inst/doc/cor.JGR-img2.png
A CADStat/inst/doc/styles
A CADStat/inst/doc/styles/caddis.css
A CADStat/inst/doc/cor.JGR-img3.png
A CADStat/inst/doc/conf
A CADStat/inst/doc/conf/writer2xhtml.xml
A CADStat/inst/doc/conf/cleanxhtml.xml
A CADStat/inst/doc/scatterplot.JGR.html
A CADStat/inst/doc/CADStat.JGR.odt
A CADStat/inst/doc/glm.pred.JGR.html
A CADStat/inst/doc/loaddata.odt
A CADStat/inst/doc/pca.fa.JGR_html_7b2961fb.png
A CADStat/inst/doc/scatterplot.JGR-img1.png
A CADStat/inst/doc/scatterplot.JGR-img2.png
A CADStat/inst/doc/taxonomic.correct.gif
A CADStat/inst/doc/scatterplot.JGR-img3.png
A CADStat/inst/doc/CADStat.JGR.html
A CADStat/inst/doc/glm.pred.JGR-img1.png
A CADStat/inst/doc/glm.pred.JGR-img2.png
A CADStat/inst/doc/glm.pred.JGR-img3.png
A CADStat/inst/doc/glm.pred.JGR-img4.png
A CADStat/inst/doc/stylesheets
A CADStat/inst/doc/stylesheets/caddis.xsl
A CADStat/inst/doc/rpart.JGR.html
A CADStat/inst/doc/pca.fa.JGR.html
A CADStat/inst/doc/CADStat.JGR-img1.png
A CADStat/inst/doc/CADStat.JGR-img2.png
A CADStat/inst/doc/rpart.JGR-img1.png
A CADStat/inst/doc/rpart.JGR-img2.png
A CADStat/inst/doc/rpart.JGR-img3.png
A CADStat/inst/doc/lm.JGR.html
A CADStat/inst/doc/pca.JGR-img1.png
A CADStat/inst/doc/rq.JGR.html
A CADStat/inst/doc/lm.JGR-img1.png
A CADStat/inst/doc/lm.JGR-img2.png
A CADStat/inst/doc/lm.JGR-img3.png
A CADStat/inst/doc/conditionalprob.JGR.html
A CADStat/inst/doc/loaddata.html
A CADStat/inst/doc/trait.tool-img1.png
A CADStat/inst/doc/bioinfer.JGR.html
A CADStat/inst/doc/rq.JGR-img1.png
A CADStat/inst/doc/rq.JGR-img2.png
A CADStat/inst/doc/rq.JGR-img3.png
A CADStat/inst/doc/conditionalprob.JGR-img1.png
A CADStat/inst/doc/conditionalprob.JGR-img2.png
A CADStat/inst/doc/conditionalprob.JGR-img3.png
A CADStat/inst/doc/loaddata-img1.png
A CADStat/inst/doc/loaddata-img2.png
A CADStat/inst/doc/rq.JGR.odt
A CADStat/inst/doc/loaddata-img3.png
A CADStat/inst/doc/loaddata-img4.png
A CADStat/inst/doc/loaddata-img5.png
A CADStat/inst/doc/bioinfer.JGR-img1.png
A CADStat/inst/doc/conditionalprob.JGR.odt
A CADStat/inst/doc/loaddata-img6.png
A CADStat/inst/doc/boxplot.JGR.odt
A CADStat/inst/doc/pca.fa.JGR_html_70837ecc.png
A CADStat/inst/doc/scatterplot.JGR.odt
A CADStat/inst/doc/boxplot.JGR.html
A CADStat/inst/doc/glm.pred.JGR.odt
A CADStat/inst/scripts
A CADStat/inst/scripts/jgr.exe
A CADStat/inst/scripts/run
A CADStat/inst/java
A CADStat/inst/java/CADStat.jar
A CADStat/inst/menu
A CADStat/inst/menu/menu.xml
U CADStat
Checked out revision 241.

Distribution log

SVN checkout/GIT clone log


Build log for Windows (R 2.11.x)

* checking for file 'CADStat/DESCRIPTION' ... OK
* preparing 'CADStat':
* checking DESCRIPTION meta-information ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building binary distribution
WARNING: some HTML links may not be found
* installing *source* package 'CADStat' ...

Using auto-selected zip option '--use-zip-data'

** R
** data
** inst
** preparing package for lazy loading
Loading required package: rJava
Loading required package: JavaGD
Loading required package: iplots

Please use the corresponding JGR launcher to start JGR.
Run JGR() for details. You can also use JGR(update=TRUE) to update JGR.

Warning in library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
there is no package called 'XML'
Error : package 'XML' could not be loaded
ERROR: lazy loading failed for package 'CADStat'
* removing 'c:/tmp/Rinst59222225/CADStat'
ERROR
* installation failed


Build log for Windows 64-bit (R 2.11.x)

* checking for file 'CADStat/DESCRIPTION' ... OK
* preparing 'CADStat':
* checking DESCRIPTION meta-information ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building binary distribution
WARNING: some HTML links may not be found
* installing *source* package 'CADStat' ...

Using auto-selected zip option '--use-zip-data'

** R
** data
** inst
** preparing package for lazy loading
Loading required package: rJava
Loading required package: JavaGD
Loading required package: iplots

Please use the corresponding JGR launcher to start JGR.
Run JGR() for details. You can also use JGR(update=TRUE) to update JGR.

Warning in library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
there is no package called 'XML'
Error : package 'XML' could not be loaded
ERROR: lazy loading failed for package 'CADStat'
* removing 'c:/tmp/Rinst215684982/CADStat'
ERROR
* installation failed


Build log for Mac OS X 10.5 (R 2.16.x)

ERROR: dependencies 'JGR', 'XML', 'bio.infer', 'gdata', 'gmodels', 'car', 'quantreg' are not available for package 'CADStat'
* removing '/Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/CADStat'

Build log for Windows 7 (R 3.0.x)

(CADStat 2.2-5)
* installing to library 'z:/rforge/Rlib/win7-3.0'
* installing *source* package 'CADStat' ...
** R
** data
** inst
** preparing package for lazy loading
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
Warning: ignoring .First.lib() for package 'CADStat'
*** arch - x64
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
Warning: ignoring .First.lib() for package 'CADStat'
* MD5 sums
packaged installation of 'CADStat' as CADStat_2.2-5.zip
* DONE (CADStat)