slidify - Interactive HTML5 Presentations from R Markdown - check results
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slidify

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Package R docs

Version: 0.5
Result: WARNING
Check time: 2018-01-26 16:24
* using log directory ''
* using R Under development (unstable) (2018-01-26 r74168)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ISO8859-1
* using option '--as-cran'
* checking for file 'slidify/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'slidify' version '0.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialized R objects in the sources ... OK
* checking whether package 'slidify' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
MIT
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' imports not declared from:
'rjson' 'rstudio' 'shiny' 'slidifyLibraries'
'library' or 'require' calls not declared from:
'httr' 'shiny' 'slidifyLibraries'
'library' or 'require' calls in package code:
'httr' 'shiny' 'slidifyLibraries'
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
':::' call which should be '::': 'tools:::file_path_sans_ext'
See the note in ?`:::` about the use of this operator.
Unexported objects imported by ':::' calls:
'markdown:::.b64EncodeImages' 'shiny:::dependsOnFile'
See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
'read_file'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
read_config: warning in dir(file.path(wpath, "css"), pattern = ".css$",
full = TRUE): partial argument match of 'full' to 'full.names'
read_config: warning in dir(file.path(wpath, "js"), pattern = ".js$",
full = TRUE): partial argument match of 'full' to 'full.names'
runDeck : : warning in dir(appDir, pattern = "^app", full =
T): partial argument match of 'full' to 'full.names'
add_config_fr: no visible global function definition for 'modifyList'
author: no visible global function definition for 'file.edit'
check_slidifyLibraries: no visible global function definition for
'packageVersion'
get_config: no visible global function definition for 'modifyList'
get_pages_by_groups: no visible global function definition for
'setNames'
includeDeck: no visible global function definition for 'HTML'
is_installed: no visible global function definition for
'installed.packages'
make_standalone_: no visible global function definition for 'URLencode'
pagify: no visible binding for '<<-' assignment to '.SLIDIFY_ENV'
pagify: no visible global function definition for 'modifyList'
pagify: no visible binding for global variable '.SLIDIFY_ENV'
parse_body: no visible global function definition for 'setNames'
parse_meta2: no visible global function definition for 'modifyList'
parse_meta2: no visible binding for global variable 'y2'
parse_slide : : no visible global function definition for
'modifyList'
publish_gist: no visible global function definition for 'POST'
publish_gist: no visible global function definition for 'authenticate'
publish_gist: no visible global function definition for 'add_headers'
publish_gist: no visible global function definition for 'content'
publish_github: no visible global function definition for 'browseURL'
publish_rpubs: no visible global function definition for 'browseURL'
read_config: no visible global function definition for 'setNames'
read_layouts: no visible global function definition for 'setNames'
render_deck : render_slide: no visible global function definition for
'modifyList'
render_page: no visible global function definition for 'modifyList'
render_slide: no visible global function definition for 'modifyList'
runDeck: no visible global function definition for 'make_interactive'
runDeck: no visible global function definition for 'addResourcePath'
runDeck : : no visible global function definition for
'renderCodeCells'
slidify: no visible binding for '<<-' assignment to '.SLIDIFY_ENV'
slidify: no visible global function definition for 'modifyList'
slidify: no visible binding for global variable '.SLIDIFY_ENV'
to_deck: no visible global function definition for 'modifyList'
Undefined global functions or variables:
.SLIDIFY_ENV HTML POST URLencode addResourcePath add_headers
authenticate browseURL content file.edit installed.packages
make_interactive modifyList packageVersion renderCodeCells setNames
y2
Consider adding
importFrom("stats", "setNames")
importFrom("utils", "URLencode", "browseURL", "file.edit",
"installed.packages", "modifyList", "packageVersion")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'publish.Rd':
'publish_github'

Missing link or links in documentation object 'publish_dropbox.Rd':
'publish_github'

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... WARNING
Undocumented code objects:
'blogify' 'includeDeck' 'knit2slides' 'pagify' 'parse_deck'
'publish_gist' 'publish_github' 'render_pages' 'slidify_text'
'view_deck'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'runDeck':
runDeck
Code: function(deckDir = ".", appDir = file.path(deckDir, "apps"),
shiny = TRUE, ...)
Docs: function(deckDir = ".", appDir = file.path(deckDir, "apps"),
shiny = TRUE)
Argument names in code not in docs:
...

Codoc mismatches from documentation object 'slidify':
slidify
Code: function(inputFile, knit_deck = TRUE, return_page = FALSE,
save_payload = FALSE, envir = parent.frame())
Docs: function(inputFile, knit_deck = TRUE, return_page = FALSE,
save_payload = FALSE)
Argument names in code not in docs:
envir

* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'render_page'
'return_page' 'save_payload'

Undocumented arguments in documentation object 'runDeck'
'deckDir' 'appDir' 'shiny'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... WARNING
'library' or 'require' call not declared from: 'testthat'
* checking tests ...
Running 'test-all.R'
OK
* checking PDF version of manual ... OK
* DONE

Status: 6 WARNINGs, 2 NOTEs
See
'/00check.log'
for details.



Installation log: 00install.out

Distribution log

SVN checkout/GIT clone log


Build log for Windows 7 (R 3.0.x)

(slidify 0.3.3)
* installing to library 'z:/rforge/Rlib/win7-3.0'
ERROR: dependency 'yaml' is not available for package 'slidify'
* removing 'z:/rforge/Rlib/win7-3.0/slidify'