climates
About climates
|
Version: 0.1-1.3
Result: WARNING Check time: 2013-05-25 01:04 * using log directory '' * using R Under development (unstable) (2013-05-08 r62723) * using platform: x86_64-unknown-linux-gnu (64-bit) * using session charset: ISO8859-1 * checking for file 'climates/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'climates' version '0.1-1.3' * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: 'clim.pact' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'climates' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Non-standard license specification: GPL version 2 or newer Standardizable: TRUE Standardized license specification: GPL (>= 2) * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE bioclim: warning in matrix(NA, nr = tsize, nc = 19): partial argument match of 'nr' to 'nrow' bioclim: warning in matrix(NA, nr = tsize, nc = 19): partial argument match of 'nc' to 'ncol' bioclim: warning in matrix(NA, nr = tsize, nc = 12): partial argument match of 'nr' to 'nrow' bioclim: warning in matrix(NA, nr = tsize, nc = 12): partial argument match of 'nc' to 'ncol' bioclim: warning in matrix(NA, nr = tsize, nc = 52): partial argument match of 'nr' to 'nrow' bioclim: warning in matrix(NA, nr = tsize, nc = 52): partial argument match of 'nc' to 'ncol' extremes: warning in matrix(NA, nr = tsize, nc = 4): partial argument match of 'nr' to 'nrow' extremes: warning in matrix(NA, nr = tsize, nc = 4): partial argument match of 'nc' to 'ncol' extremes: warning in matrix(NA, nr = tsize, nc = 12): partial argument match of 'nr' to 'nrow' extremes: warning in matrix(NA, nr = tsize, nc = 12): partial argument match of 'nc' to 'ncol' extremes: warning in matrix(NA, nr = tsize, nc = 52): partial argument match of 'nr' to 'nrow' extremes: warning in matrix(NA, nr = tsize, nc = 52): partial argument match of 'nc' to 'ncol' interp2grid: warning in matrix(out, nr = length(yout), byrow = FALSE): partial argument match of 'nr' to 'nrow' interp2grid: warning in matrix(out, nr = length(xout), byrow = FALSE): partial argument match of 'nr' to 'nrow' nc2dataframe: warning in matrix(c(out$lat, out$lon, nc$dat), nr = nrow(out), nc = length(nc$tim) + 2): partial argument match of 'nr' to 'nrow' nc2dataframe: warning in matrix(c(out$lat, out$lon, nc$dat), nr = nrow(out), nc = length(nc$tim) + 2): partial argument match of 'nc' to 'ncol' read.nc : instring: no visible global function definition for 'lower.case' read.nc: no visible global function definition for 'cdfcont' * checking Rd files ... WARNING prepare_Rd: DS.GCM.to.grid.Rd:6-8: Dropping empty section \description prepare_Rd: DS.GCM.to.grid.Rd:20-22: Dropping empty section \details prepare_Rd: DS.GCM.to.grid.Rd:23-29: Dropping empty section \value prepare_Rd: DS.GCM.to.grid.Rd:36-38: Dropping empty section \note prepare_Rd: DS.GCM.to.grid.Rd:33-35: Dropping empty section \author prepare_Rd: DS.GCM.to.grid.Rd:30-32: Dropping empty section \references prepare_Rd: DS.GCM.to.grid.Rd:42-44: Dropping empty section \seealso checkRd: (5) DS.GCM.to.grid.Rd:0-67: Must have a \description prepare_Rd: append.nc.Rd:5-7: Dropping empty section \description prepare_Rd: append.nc.Rd:20-22: Dropping empty section \details prepare_Rd: append.nc.Rd:23-29: Dropping empty section \value prepare_Rd: append.nc.Rd:36-38: Dropping empty section \note prepare_Rd: append.nc.Rd:33-35: Dropping empty section \author prepare_Rd: append.nc.Rd:30-32: Dropping empty section \references prepare_Rd: append.nc.Rd:42-44: Dropping empty section \seealso checkRd: (5) append.nc.Rd:0-76: Must have a \description prepare_Rd: extend.global.data.Rd:5-7: Dropping empty section \description prepare_Rd: extend.global.data.Rd:17-19: Dropping empty section \details prepare_Rd: extend.global.data.Rd:20-26: Dropping empty section \value prepare_Rd: extend.global.data.Rd:33-35: Dropping empty section \note prepare_Rd: extend.global.data.Rd:30-32: Dropping empty section \author prepare_Rd: extend.global.data.Rd:27-29: Dropping empty section \references prepare_Rd: extend.global.data.Rd:39-41: Dropping empty section \seealso checkRd: (5) extend.global.data.Rd:0-79: Must have a \description prepare_Rd: extract.monthly.averages.Rd:5-7: Dropping empty section \description prepare_Rd: extract.monthly.averages.Rd:23-25: Dropping empty section \details prepare_Rd: extract.monthly.averages.Rd:26-32: Dropping empty section \value prepare_Rd: extract.monthly.averages.Rd:39-41: Dropping empty section \note prepare_Rd: extract.monthly.averages.Rd:36-38: Dropping empty section \author prepare_Rd: extract.monthly.averages.Rd:33-35: Dropping empty section \references prepare_Rd: extract.monthly.averages.Rd:45-47: Dropping empty section \seealso checkRd: (5) extract.monthly.averages.Rd:0-78: Must have a \description prepare_Rd: nc2dataframe.Rd:5-7: Dropping empty section \description prepare_Rd: nc2dataframe.Rd:17-19: Dropping empty section \details prepare_Rd: nc2dataframe.Rd:20-26: Dropping empty section \value prepare_Rd: nc2dataframe.Rd:33-35: Dropping empty section \note prepare_Rd: nc2dataframe.Rd:30-32: Dropping empty section \author prepare_Rd: nc2dataframe.Rd:27-29: Dropping empty section \references prepare_Rd: nc2dataframe.Rd:39-41: Dropping empty section \seealso checkRd: (5) nc2dataframe.Rd:0-61: Must have a \description * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Missing link or links in documentation object '/climates/man/anom.prec.Rd': 'retrieve.nc' 'extract.monthly.average' Missing link or links in documentation object '/climates/man/anom.temp.Rd': 'retrieve.nc' 'extract.monthly.average' Missing link or links in documentation object '/climates/man/extremes.Rd': 'bioclim.Rd' Missing link or links in documentation object '/climates/man/read.nc.Rd': 'datestr2num' 'mixFields' See the information in section 'Cross-references' of the 'Writing R Extensions' manual. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Functions or methods with usage in documentation object 'read.nc' but not in code: retrieve.nc * checking Rd \usage sections ... WARNING Objects in \usage without \alias in documentation object 'interp2pnt': 'interp2grid' Undocumented arguments in documentation object 'read.nc' 'silent' 'miss2na' Objects in \usage without \alias in documentation object 'read.nc': 'retrieve.nc' Bad \usage lines found in documentation object 'DS.GCM.to.grid': DS.GCM.to.pnt = function(nc,lon,lat,type=2) Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See the chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... WARNING Argument items with no description in Rd object 'DS.GCM.to.grid': 'nc' 'cellsize' 'type' 'lon' 'lat' * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... OK * checking PDF version of manual ... OK WARNING: There were 5 warnings. NOTE: There were 3 notes. See '/00check.log' for details. Installation log: 00install.out
Build log for Windows (R 2.11.x)* checking for file 'climates/DESCRIPTION' ... OK * preparing 'climates': * checking DESCRIPTION meta-information ... OK * cleaning src * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution WARNING: some HTML links may not be found * installing *source* package 'climates' ... ** libs making DLL ... gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -O3 -Wall -std=gnu99 -c interpolate.c -o interpolate.o gcc -shared -s -static-libgcc -o climates.dll tmp.def interpolate.o -Lc:/PROGRA~1/r/R-211~1.0/bin -lR installing to c:/tmp/Rinst152409869/climates/libs ... done ** R ** preparing package for lazy loading ** help Warning: ./man/read.nc.Rd:9: unexpected section header '\usage' Warning: ./man/read.nc.Rd:19: unexpected section header '\arguments' Warning: ./man/read.nc.Rd:20: unknown macro '\item' Warning: ./man/read.nc.Rd:21: unknown macro '\item' Warning: ./man/read.nc.Rd:22: unknown macro '\item' Warning: ./man/read.nc.Rd:23: unknown macro '\item' Warning: ./man/read.nc.Rd:24: unknown macro '\item' Warning: ./man/read.nc.Rd:25: unknown macro '\item' Warning: ./man/read.nc.Rd:26: unknown macro '\item' Warning: ./man/read.nc.Rd:27: unknown macro '\item' Warning: ./man/read.nc.Rd:28: unknown macro '\item' Warning: ./man/read.nc.Rd:29: unknown macro '\item' Warning: ./man/read.nc.Rd:30: unknown macro '\item' Warning: ./man/read.nc.Rd:31: unknown macro '\item' Warning: ./man/read.nc.Rd:32: unknown macro '\item' Warning: ./man/read.nc.Rd:34: unknown macro '\item' Warning: ./man/read.nc.Rd:35: unknown macro '\item' Warning: ./man/read.nc.Rd:36: unknown macro '\item' Warning: ./man/read.nc.Rd:37: unknown macro '\item' Warning: ./man/read.nc.Rd:38: unknown macro '\item' Warning: ./man/read.nc.Rd:39: unknown macro '\item' Warning: ./man/read.nc.Rd:42: unknown macro '\item' Warning: ./man/read.nc.Rd:46: unexpected section header '\value' Warning: ./man/read.nc.Rd:67: unexpected section header '\author' Warning: ./man/read.nc.Rd:68: unexpected section header '\references' Warning: ./man/read.nc.Rd:69: unexpected section header '\examples' Warning: ./man/read.nc.Rd:70: unexpected END_OF_INPUT ' ' *** installing help indices ** building package indices ... ** MD5 sums ** testing if installed package can be loaded packaged installation of 'climates' as climates_0.1-1.zip * DONE (climates) Build log for Windows 64-bit (R 2.11.x)* checking for file 'climates/DESCRIPTION' ... OK * preparing 'climates': * checking DESCRIPTION meta-information ... OK * cleaning src * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution WARNING: some HTML links may not be found * installing *source* package 'climates' ... ** libs making DLL ... x86_64-w64-mingw32-gcc -I"c:/PROGRA~1/r/R-211~1.0-X/include" -O2 -Wall -gdwarf-2 -std=gnu99 -c interpolate.c -o interpolate.o x86_64-w64-mingw32-gcc -shared -static-libgcc -o climates.dll tmp.def interpolate.o -Lc:/PROGRA~1/r/R-211~1.0-X/bin -lR installing to c:/tmp/Rinst144844912/climates/libs/x64 ... done ** R ** preparing package for lazy loading ** help Warning: ./man/read.nc.Rd:9: unexpected section header '\usage' Warning: ./man/read.nc.Rd:19: unexpected section header '\arguments' Warning: ./man/read.nc.Rd:20: unknown macro '\item' Warning: ./man/read.nc.Rd:21: unknown macro '\item' Warning: ./man/read.nc.Rd:22: unknown macro '\item' Warning: ./man/read.nc.Rd:23: unknown macro '\item' Warning: ./man/read.nc.Rd:24: unknown macro '\item' Warning: ./man/read.nc.Rd:25: unknown macro '\item' Warning: ./man/read.nc.Rd:26: unknown macro '\item' Warning: ./man/read.nc.Rd:27: unknown macro '\item' Warning: ./man/read.nc.Rd:28: unknown macro '\item' Warning: ./man/read.nc.Rd:29: unknown macro '\item' Warning: ./man/read.nc.Rd:30: unknown macro '\item' Warning: ./man/read.nc.Rd:31: unknown macro '\item' Warning: ./man/read.nc.Rd:32: unknown macro '\item' Warning: ./man/read.nc.Rd:34: unknown macro '\item' Warning: ./man/read.nc.Rd:35: unknown macro '\item' Warning: ./man/read.nc.Rd:36: unknown macro '\item' Warning: ./man/read.nc.Rd:37: unknown macro '\item' Warning: ./man/read.nc.Rd:38: unknown macro '\item' Warning: ./man/read.nc.Rd:39: unknown macro '\item' Warning: ./man/read.nc.Rd:42: unknown macro '\item' Warning: ./man/read.nc.Rd:46: unexpected section header '\value' Warning: ./man/read.nc.Rd:67: unexpected section header '\author' Warning: ./man/read.nc.Rd:68: unexpected section header '\references' Warning: ./man/read.nc.Rd:69: unexpected section header '\examples' Warning: ./man/read.nc.Rd:70: unexpected END_OF_INPUT ' ' *** installing help indices ** building package indices ... ** MD5 sums ** testing if installed package can be loaded packaged installation of 'climates' as climates_0.1-1.zip * DONE (climates) Build log for Mac OS X 10.5 (R 2.16.x)* installing *source* package 'climates' ... ** libs *** arch - i386 gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c interpolate.c -o interpolate.o gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o climates.so interpolate.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/climates/libs/i386 *** arch - ppc gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c interpolate.c -o interpolate.o gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o climates.so interpolate.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/climates/libs/ppc *** arch - x86_64 gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c interpolate.c -o interpolate.o gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o climates.so interpolate.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/climates/libs/x86_64 ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded *** arch - i386 *** arch - ppc *** arch - x86_64 packaged installation of 'climates' as 'climates_0.1-1.2.tgz' * DONE (climates) Build log for Windows 7 (R 3.0.x) (climates 0.1-1.3) * installing to library 'z:/rforge/Rlib/win7-3.0' * installing *source* package 'climates' ... ** libs *** arch - i386 gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c interpolate.c -o interpolate.o gcc -m32 -shared -s -static-libgcc -o climates.dll tmp.def interpolate.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/i386 -lR installing to z:/rforge/Rlib/win7-3.0/climates/libs/i386 *** arch - x64 gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c interpolate.c -o interpolate.o gcc -m64 -shared -s -static-libgcc -o climates.dll tmp.def interpolate.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/x64 -lR installing to z:/rforge/Rlib/win7-3.0/climates/libs/x64 ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded *** arch - i386 *** arch - x64 * MD5 sums packaged installation of 'climates' as climates_0.1-1.3.zip * DONE (climates) |