Package R docs
CHANGES IN animation VERSION 2.4
o saveGIF() on Windows might give an error message "the input line it too
long" when the command to be passed to ImageMagick/GraphicsMagic is too long;
now the command is quoted by double quotes (based on an answer to
http://stackoverflow.com/q/682799/559676) (thanks, Aaron Dodd)
o save*() functions should overwrite the output file (#50, #60).
CHANGES IN animation VERSION 2.3
o added a new argument `navigator' to saveHTML() so that we can remove the
navigator conveniently without having to understand SciAnimator library
o the default value for the argument `other.opts` in saveVideo() was changed
to '-pix_fmt yuv420p' when the output format is MP4 (Skye Bender-deMoll, #49)
o the defunct functions highlight.def(), write.rss() and ani.news() were
finally removed from this package
o the functions ani.start() and ani.stop() are defunct and will be removed
in the next version of this package; please use saveHTML() instead
o the animation option `outdir` in ani.options() was removed because it
was confusing to many users that the output is in a temporary directory by
default; now all files are written relative to the current working
o the animation option `convert` in ani.options() is expected to be the
path to ImageMagick/GraphicsMagick _without_ quotes, i.e. not the
shQuote() version (#35)
o the animation option `htmlfile' in ani.options() was removed, because it
was only used in saveHTML() and g.brownian.motion(), and is not a general
o the `clean' argument in saveVideo() was removed: images will be created
in the temporary directory, and will not be explicitly cleaned (R will
clean them then it quits)
CHANGES IN animation VERSION 2.2
o datasets in this package are lazy loaded now, which means we no longer need,
for example, data(pollen) -- just use pollen
o added an article in the articles/ directory of the package, which will be
published in the Journal of Statistical Software; see citation('animation')
o fixed #28: the single quotes in the example code of saveHTML() in the PDF
manual were not correctly rendered (thanks, James Marca)
o the animation website http://animation.yihui.name is being rebuilt with
knitr and Jekyll on Github (contributions/pull requests are welcome):
CHANGES IN animation VERSION 2.1
o x- and y-axis in the top scatter plot in boot.iid() are switched;
now x-axis is the sample value and y-axis is the index
o Rosling.bubbles() was rewritten to avoid .Internal() and the usage
was slightly changed (see documentation)
CHANGES IN animation VERSION 2.0-6
o demo(`elephant') to show a winking pink elephant; who said
elephants cannot dance? (thanks, Neil Gunther)
o all animations are using dev.hold() and dev.flush() now, so they
will no longer flicker under Linux and Mac
o saveGIF() and im.convert() returns the command for the conversion,
which might be helpful for debugging. A note on the limit of
ImageMagick or GraphicsMagick was added to the documentation of
im.convert() (thanks, Florian Knorr)
o fixed a typo in ?animation (imgname should be img.name; thanks,
o ani.pause() gained an argument `interval' to specify the time
CHANGES IN animation VERSION 2.0-5
o saveVideo() fails to recognize FFmpeg when R is in a
non-interactive mode (thanks, Felipe Olmos)
o saveHTML() will tell the user how to change the output dir
CHANGES IN animation VERSION 2.0-4
o a new function boot.lowess() to examine the LOWESS fit with
o saveSWF(): the path of images passed to SWF Tools has been fixed
(using the absolute path instead of the relative one); the images
are named like Rplot%03d.png now to avoid incorrect ordering under
Windows (thanks, Michael Hoehle)
o the dataset CLELAL09 gained a new variable `team' to indicate
the team that the rows correspond to
CHANGES IN animation VERSION 2.0-3
o sim.qqnorm() gained a new argument `last.plot' to do something
after drawing the QQ plot, e.g. add a diagonal line (abline(0, 1))
o for saveLatex(): when full.path = TRUE, \ will be replaced with
/ in the file path so that LaTeX can really find the animation file
o ani.options() will perform a simple check on the validity of the
options and issue warnings if the device and the file extension do
not match, or the width and height for the pdf() device are greater
than 100 inches
CHANGES IN animation VERSION 2.0-2
o demo(`IBM') to show IBM stock closing prices from 2000 to 2010
o ani.record() gained a new argument `replay.cur', which can be
helpful when we want to capture low-level plot changes without
storing all the plots in memory (default behaviour of ani.record())
o a new function saveVideo() to convert a sequence of images to a
video using FFmpeg (thanks, Thomas Julou)
o we can easily create an animation using Rweb now; see a demo in
system.file(`misc', `Rweb', `demo.html', package = 'animation')
o a new function qpdf() as a wrapper to the program `qpdf', which
is mainly used to compress the PDF files (it is recommended over
o saveLatex() gained a new argument `full.path': when the
animation frames are not in the same directory with the LaTeX
document, we can set full.path = TRUE to ensure LaTeX can find the
o grad.desc() gained two new arguments: `gr' to provide the
gradient function, and `main' to specify to title of the plot
(thanks, Zeno Adams)
o clt.ani() gained two arguments `mean' and `sd' to draw the
theoretical limiting distribution
o a new demo('ggobi_animation') to show how to record GGobi plots
as an animation in the HTML file
o saveMovie() was renamed to saveGIF() to better reflect what the
function does; this change will not affect users because `saveMovie'
is still an alias to `saveGIF' (i.e. they are identical)
o saveSWF() puts all the image frames into the temp dir instead of
ani.options(`outdir') (similar to saveGIF())
o the location of the argument `img.name' was moved to the 3rd
place in saveSWF() to be consistent to other saveXXX() functions
o clt.ani() gained a new argument `xlim' to set the x-axis limit
of the histogram
o knn.ani() gained the ... argument to pass additional arguments
to create the empty "frame" for the animation
o use packageDescription() instead of packageVersion() in
saveHTML() and ani.stop() because there is a weird error reported
when using packageVersion() (thanks, Alex Tek)
CHANGES IN animation VERSION 2.0-1
o demo('Xmas_card') contributed by Yuan Huang
o demo(`flowers') to show how to download images from the Internet
and create an animation
o a new function pdftk() as a wrapper to call the Pdftk toolkit
(mainly for compressing PDF graphics output)
o saveLatex(), saveSWF() and saveMovie() can compress the PDF
graphics using Pdftk (if available) now; if ani.options(`ani.type')
is `pdf' and the `pdftk' option is set, these functions will try the
o new functions ani.record() and ani.replay() to record and replay
the animations; they can be used to capture the changes in the
graphics made by low-level plotting commands (see ?ani.record for
o the function tidy.source() was completely removed from this
package; users should go to the formatR package (tidy.source() is
o the argument `expr' in saveHTML(), saveLatex(), saveMovie() and
saveSWF() will be evaluated by eval(), so we may pass a real R
expression (see ?expression) to `expr', e.g. saveHTML(expression(for
(i in 1:10) plot(runif(30)))); but note this argument does not *have
to* be a real R expression -- you can still use an arbitrary R code
chunk, e.g. saveHTML(for (i in 1:10) plot(runif(30))) (thanks,
CHANGES IN animation VERSION 2.0-0
o a new demo `Xmas2': Merry Christmas with snowflakes (see
demo(`Xmas2', 'animation'); thanks, Jing Jiao)
o a new function saveHTML() to insert animations into HTML pages
(this was designed to replace the old ani.start() and ani.stop();
SciAnimator library and jQuery)
o ani.options() gained a new option `autoplay' to indicate whether
to autoplay the animation in the HTML page created by saveHTML()
o in fact ani.options() was rewritten, but this should not have
any influence on users; the usage is the same
o ani.options() gained a new option `use.dev' to decide whether to
use the graphics device provided in ani.options(`ani.dev') when
calling saveHTML(), saveLatex(), saveMovie() and saveSWF()
o ani.options() has a couple of hidden options (`convert',
`swftools', `img.fmt') which can be useful too; see ?ani.options for
o a new function ani.pause(): it is a wrapper to
Sys.sleep(interval) but it will not pause when called in a
non-interactive graphics device (usually the off-screen devices);
this is the recommended way to specify the pause in the animation
now -- all the functions in this package have been adjusted to use
o a new demo(`pollen') to show the hidden `structure' in a large
data (requires the rgl package)
o a new demo(`CLEvsLAL') to `replay' the NBA game between CLE and
LAL on 2009 Christmas (with a new dataset `CLELAL09')
o a new demo(`fireworks') to set fireworks using R (thanks,
o saveLatex() can work with the rgl package to produce 3D animations
in a PDF document now; see demo('rgl_animation')
o a new demo('rgl_animation') to demonstrate how to insert rgl 3D
animations into a LaTeX document and compile to PDF
o a new demo('use_Cairo') to show how to use the Cairo device in
this package to obtain high-quality output
o a new demo('Sweave_animation') to show how to insert animations
into Sweave documents
o a new demo('game_of_life') to demonstrate the (amusing) Game of
Life (thanks, Linlin Yan)
o the documentation of this package has been tremendously revised;
hopefully it is more clear to read now
o several arguments in saveMovie(), im.convert(), saveSWF() and
saveLatex() were removed, because they can be specified by
ani.options(); this can simplify the usage of these functions
o the argument `para' in saveMovie() was removed; the argument
`ani.first' was also removed from all the save*() functions, because
this can be written in `expr' and there is no need to provide an
o the path of the output in im.convert() and gm.convert() will be
quoted, because sometimes users might supply a path containing
spaces (thanks, Phalkun Chheng)
o the option `filename' in ani.options() was renamed to `htmlfile'
so that the meaning of this option is more clear; `footer' was
renamed to `verbose' too
o ani.options() can accept any arguments now
o im.convert() and gm.convert() will no longer stop() when the
convert utility cannot be found; instead, they only issue warnings;
a hidden option ani.options(`convert') can be used to specify the
location of convert.exe in ImageMagick
o saveMovie(), saveHTML(), saveSWF() and saveLatex() will try to
open the output if ani.options(`autobrowse') is TRUE; and they will
keep the current working directory untouched when evaluating `expr'
(i.e. `expr' will be evaluated under getwd())
CHANGES IN animation VERSION 1.1-5
o the package has a NAMESPACE now (so .First.lib was changed to
o im.convert() and gm.convert() can accept a vector of time
intervals now (i.e. the time interval between image frames does not
have to be a constant any more)
o added a dataset `iatemp' (yearly average temperature of central
o saveLatex() can be used in Sweave to dynamically insert PDF
animations now -- it will automatically detect if it was called in
Sweave and output the relevant LaTeX code to the LaTeX document
o saveSWF() is using system() instead of shell() to call *2swf
CHANGES IN animation VERSION 1.1-4
o demo(`Mandelbrot') shows the Mandelbrot set
o the package is now maintained on GitHub
(https://github.com/yihui/animation) and using roxygen to document
o the functions highlight.def(), write.rss() and tidy.source()
were defunct because they are irrelevant
o ani.news() was removed from the package; we can use news(package
= 'animation') instead
o the MASS package is imported instead of being attached; in fact
only lda() in MASS is used in the animation package.
o fixed a buglet in saveMovie(): outdir does not actually work.
o im.convert() will try to open the output using the default
application in the OS (e.g. using command 'xdg-open', or `open')
CHANGES IN animation VERSION 1.1-3
o demo(`jumpingHorse') shows a horse jumping on the chess board
(contributed by Linlin Yan)
o A new function im.convert() which comes from saveMovie() but
serves as a more general- purpose function; it can convert a series
of files (not necessarily produced in R) to GIF/MPEG, and tries its
best to find ImageMagick automatically (even you only have LyX
installed) Thanks, Kelvin Lam.
o saveMovie() gained a new argument `fileext' to specify the file
extension of the image frames (the old approach to get the file ext
is not appropriate if we use other graphics devices, e.g. Cairo);
meanwhile, saveMovie() now uses im.convert() to convert images to an
o saveMovie() now generate the image frames in a temp directory
and output the animation to the working directory by default
(thanks, Thomas Julou)
CHANGES IN animation VERSION 1.1-2
o demo(`hanoi') will demonstrate the Tower of Hanoi game
(contributed by Linlin Yan)
o A new function sample.ratio() to demonstrate the advantage of
ratio estimation in sampling survey. (thanks, Amber Watkins)
o added a note for the function newton.method() that the argument
`FUN' needs to be defined without braces. (thanks, Peter Ehlers)
o fixed a bug in saveLatex(): the frame number should start with 0
instead of 1. (thanks, Taiyun)
CHANGES IN animation VERSION 1.1-1
o saveMovie() gained two new options: `clean' to determin whether
to delete individual image frames after conversion; `cmd.fun' to
decide which function to be used to invoke the OS command (system or
o improved the way to find `convert' for saveMovie() under Windows
which is a long-lasting confusing problem for Windows users (thanks,
o fixed a bug caused by the `outdir' option in ani.options() when
`outdir' is a relative path which makes ani.stop() fail (thanks,
CHANGES IN animation VERSION 1.1-0
o three demos to illustrate recursion added: see
demo(`recur.leaf'), demo(`recur.snow') and demo(`recur.tree');
o demo(`Xmas') added
o fixed a bug for the option `interval': in the non-interactive
environment, ani.start() and ani.stop() should use
ani.options()$interval to obtain the REAL `interval' (other than 0)
o a new argument `install.animate' for saveLatex() to install the
LaTeX `animate' if it does not exist
o a new argument `width.cutoff' for tidy.source() to decide the
width of deparsed code
o removed the code to install ImageMagick in saveMovie()
o changed shell() to system() in saveMovie() (thanks, R. Woodrow
o updated the LaTeX package `animate'
CHANGES IN animation VERSION 1.0-10
o a new function MC.hitormiss() to demonstrate the 'hit or miss'
Monte Carlo integration
o a new function MC.samplemean() to demonstrate the 'sample mean'
Monte Carlo integration
o a new function price.ani() to demonstrate the stock prices
changing within a time span (inspired by Shen Dai)
o we can specify the `convert' command in saveMovie();
e.g. `imconvert' under some Windows platforms (Thanks, James
CHANGES IN animation VERSION 1.0-9
o saveLatex() to embed the animation into a LaTeX document (with
LaTeX package `animate').
o a new option `imgdir' added to ani.options() so that users can
specify the name of the image directory
o a message will come up if the animation option `nmax' is
changed; this will help users know the actual number of images in
the current session; this message will only show in interactive mode
o saveMovie() will try to install ImageMagick automatically if
`convert' not found
o query ani.options(`interval') will return 0 if the animation is
run in a non-interactive mode; this will save much time typically in
'R CMD check' (Thanks to Prof Ripley)
o the option `nmax' will be adjusted to the *actual* number of
images in the directory ani.options(`imgdir'), because sometimes the
actual number of images does not equal to ani.options(`nmax')
o shortened the descriptions in Rd files and several changes in
o fixed several buglets in ani.stop()
o changed the `while' loop to `for' loop in brownian.motion();
this will shorten the code by two lines
o ani.options(`ani.dev') can be the name of a function
(character), e.g. "png"
CHANGES IN animation VERSION 1.0-8
o ecol.death.sim() to simulate the death of two species in a field
o fixed an error in the example of HuSpeech
CHANGES IN animation VERSION 1.0-7
o moving.block() to plot a subset of data by blocks
o ani.options() gained a new argument `loop' to control the
iteration of the animation in an HTML page: TRUE to interate for
infinite times, and FALSE not to interate (only play once). Thanks,
o fixed a bug for in ani.stop(): when ani.options(footer = FALSE),
ani.stop() will report an error for non-existent object `footer'; I
should have used the value ani.options("footer") in the code.
Thanks, Marcin Kozak!
CHANGES IN animation VERSION 1.0-6
o new function sim.qqnorm() to demonstrate QQ plots for random
numbers from Normal dist'n.
CHANGES IN animation VERSION 1.0-5
o new demo `Sierpinski' for Sierpinski triangle; see
o ani.options(`footer') was changed to allow a custom string to be
written in the HTML page as the footer information. (Thanks, Jorge
o tidy.source2() was merged into tidy.source(), and tidy.source()
now returns a list of character vectors and also gains an argument
`output' to decide whether to output the tidied code (to R console
or a file).
CHANGES IN animation VERSION 1.0-4
o tidy.source2() is a improved version of tidy.source(); it
preserves some comments in R code.
o fixed a bug for normalizePath() in saveMovie() and saveSWF().
CHANGES IN animation VERSION 1.0-3
o The famous `pollen' data added. See the example for finding the
letters hidden in the data.
o A function quincunx() added to simulate the Galton box or Bean
Machine. (Thanks for the inspiration from Roger Koenker)
o A function least.squares() added to show the ordinary least
square process. (Thanks for the inspiration from Daniel Goldstein)
o A function BM.circle() added to show the Brownian Motion in a
o A function g.brownian.motion() added to demonstrate the Brownian
Motion using Google Visulization API.
o The Shapiro-Wilk normality tests are performed to independent
sample means instead of the original `cumulative' data. (Thanks,
o Arguments `col.contour' and `col.arrow' added to grad.desc() to
specify the colors for the contour lines and arrows freely; the
graphical parameters are no longer specified within the function
o The path of SWF Tools in saveSWF() will be quoted by shQuote()
instead of dQuote(). (Thanks, zhoulvjun)
CHANGES IN animation VERSION 1.0-2
o A new function Rosling.bubbles() added to show the bubbles
animations like those used in Hans Rosling's talk.
o The argument `swftools' is double quoted so that the SWF
utilities can be executed correctly when the path contains
spaces. (Thanks, Geng Yang)
CHANGES IN animation VERSION 1.0-1
o The package has provided a wrapper to produce Flash animations
using SWF Tools: saveSWF()
o A demo `wordrotation' added to show the basic method to make
animations. More demos will be added in future releases.
o A new argument `para' added to saveMovie() so that the graphics
parameters can be set for the device.
CHANGES IN animation VERSION 1.0-0
o ani.options() added to control animation parameters. It is much
better than ani.control() in previous versions.
o ani.start() and ani.stop() are modified. The former function
opens a graphics device and the latter one create an HTML page with
a new interface.
o A wiki has been build to support this package:
http://animation.yihui.name (AniWiki: Animations in Statistics)
o Graphical parameters can be set in ... argument for:
brownian.motion(), buffon.needle(), clt.ani(), conf.int(), cv.ani(),
lln.ani(), mwar.ani(), newton.method(), sample.cluster(),
o P-values are computed in clt.ani() to check the normality (using
o The vignette is abandoned and stopped being updated; the wiki
http://animation.yihui.name will be used instead.
o The way to create HTML animations is significantly changed for
the sake of a better interface and more flexible control of
animations. Read the help files for ani.control(), ani.start(),
o The function savePNG() removed. The new way to create animation
frames allows ANY graphics devices.
o ani.control() and checkargs() removed. The new way to control
animation parameters is more flexible.
CHANGES IN animation VERSION 0.2-0
o cv.nfeaturesLDA() to illustrate the process of k-fold
cross-validation to find the optimum number of features in LDA.
o A rectangular grid has been added to the plot in kmeans.ani() so
that the moving of centers can be better observed.
o The default value for the argument "source" is set to be
o The code for clt.ani() has been modified to make better
illustrations for the CLT.
CHANGES IN animation VERSION 0.1-8
o the function flip.coin() is slightly modified (a new argument
`grid' added and the digits of probabilities in the graph can be
CHANGES IN animation VERSION 0.1-7
o conf.int() to illustrate the concept of confidence intervals.
o lln.ani() to illustrate the Law of Large Numbers.
o grad.desc() for the Gradient Descent Algorithm.
o bisection.method() for the illustration of the Bisection method.
o newton.method() for the demonstration of Newton-Raphson method.
o A special function checkargs() is added to validate animation
arguments, which can promote the efficiency of animation functions.
o It doesn't need Sys.sleep() when creating HTML pages, so the
code is modified to avoid suspending in this case.
CHANGES IN animation VERSION 0.1-6
o saveMovie() to create single movies using ImageMagick.
o The number of tosses is added to the plot in flip.coin().
CHANGES IN animation VERSION 0.1-5
o cli.ani() to illustrate the Centrol Limit Theorem (CLT).
o vi.grid.illusion() to illustrate two kinds of grid illusions
(Scintillating grid illusion and Hermann grid illusion).
o Argument `...' added to tidy.source() for more flexible control
of the output.
CHANGES IN animation VERSION 0.1-4
o write.rss() for creating RSS feed files from a CSV file
containing RSS items.
o vi.lilac.chaser() for the visual illusion 'Lilac Chaser'.
o The capability of PNG device is checked before creating png
image files in savePNG().
o A bug in the assigning of `interval' in the environment `ANIenv'
CHANGES IN animation VERSION 0.1-3
o A new function highlight.def() added to dynamically generate the
R definition file for the software Highlight.
o mwar.ani() to show moving window auto-regression.
o sample.simple() for simple random sampling without replacement.
o sample.strat() for stratified sampling.
o sample.cluster for cluster sampling.
o sample.system() for systematic sampling.
o The string 'file://' was added before the path of the HTML
animation page to avoid the error caused by browseURL in ani.stop().
o File `ANI.css' and `FUN.js' were moved to the directory `js'
(because they are not `data'). Both files were modified slightly.
o The parameter for time interval can be passed to the HTML
animation page now.
o The vignette was supplemented and modified accordingly.
CHANGES IN animation VERSION 0.1-2
o An argument `col' added to flip.coin() to control colors of each
face of the coin.
o The `pageview' data updated to Dec 3, 2007.
o Points that have already been classified in knn.ani() are marked
out in later steps of classification for the rest points.
o The values of PI are silently returned in buffon.needle().
o The result for the test set can be returned in knn.ani().
o The computation for kfcv() is changed so that the sample sizes
will be more `uniformly' allocated.
o A new function ani.control() added so that the controlling
parameters can be more uniform and the scalability of the animation
functions will also be better. All the animation functions are
CHANGES IN animation VERSION 0.1-1
o A news-reading function ani.news() added so that changes will be
o boot.iid() is available for demonstration of bootstrapping i.i.d
o The arguments ... is added in animation functions to control PNG
o The sample data is permuted before cv.ani() so that every time
we do cross-validation, the splitting of trainig set and test set
will change (instead of splitting 1:n into k parts). The tick marks
of x-axis will change accordingly.
CHANGES IN animation VERSION 0.1-0
o ani.start() to start an HTML page for animations.
o ani.stop() to complete the HTML animation page.
o brownian.motion() to demonstrate Brownian motion in the 2D
o buffon.needle() to simulate the process of Buffon's needle.
o cv.ani() to demonstrate k-fold cross validation.
o flip.coin() to simulate tossing `coins'.
o kfcv() to compute sample sizes for k-fold cross-validation.
o kmeans.ani() to show the process of K-Means cluster analysis.
o knn.ani() to show k-Nearest Neighbor algorithm.
o savePNG() to save PNG image files which constitute the basic
animation frames in the HTML page.
o tidy.source() is a trivial function to 'tidy up' R code using
the internal R function parse().
o `pageview' is a daily page view data of my personal website.