SWAT2R - Input/Output functions for the SWAT hydrological model - check results
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SWAT2R

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Package R docs

Version: 0.1-11
Result: WARNING
Check time: 2018-01-26 16:27
* using log directory ''
* using R Under development (unstable) (2018-01-26 r74168)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ISO8859-1
* using option '--as-cran'
* checking for file 'SWAT2R/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SWAT2R' version '0.1-11'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialized R objects in the sources ... OK
* checking whether package 'SWAT2R' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'zoo'
A package should be listed in only one of these fields.
* checking top-level files ... NOTE
File
LICENCE
is not mentioned in the DESCRIPTION file.
Non-standard file/directory found at top level:
'WhatsNew.txt'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'foreign' 'hydroTSM'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dates2juliandays: no visible global function definition for
'txtProgressBar'
dates2juliandays : : no visible global function definition
for 'setTxtProgressBar'
obs2swatcup: no visible global function definition for 'window'
obs2swatcup: no visible global function definition for 'time'
obs2swatcup: no visible global function definition for 'write.table'
read_95ppu: no visible global function definition for 'read.table'
read_aut: no visible global function definition for 'read.fortran'
read_autocal: no visible global function definition for 'read.fortran'
read_hru: no visible global function definition for 'read.fortran'
read_qout: no visible global function definition for 'read.table'
read_qout: no visible global function definition for 'txtProgressBar'
read_qout: no visible global function definition for
'setTxtProgressBar'
read_rch: no visible global function definition for 'read.fortran'
read_rsv: no visible global function definition for 'read.fortran'
read_sed: no visible global function definition for 'read.fortran'
read_sub: no visible global function definition for 'read.fortran'
Undefined global functions or variables:
read.fortran read.table setTxtProgressBar time txtProgressBar window
write.table
Consider adding
importFrom("stats", "time", "window")
importFrom("utils", "read.fortran", "read.table", "setTxtProgressBar",
"txtProgressBar", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'obs2swatcup.Rd':
\usage lines wider than 90 characters:
obs2swatcup(x, tstep="daily", from, to, date.fmt="%Y-%m-%d", fname="Observations", dates, version=2, var.id="q_1")

Rd file 'read_hru.Rd':
\usage lines wider than 90 characters:
read_hru(file="output.hru", out.type="Q", hruID=NA, col.names=NULL, tstep,

Rd file 'read_rch.Rd':
\usage lines wider than 90 characters:
read_rch(file="output.rch", out.type="Q", rchID=NA, col.names=NULL, tstep,

Rd file 'read_rsv.Rd':
\usage lines wider than 90 characters:
read_rsv(file="output.rsv", out.type="Q", rsvID=NA, col.names=NULL, tstep,

Rd file 'read_sub.Rd':
\usage lines wider than 90 characters:
read_sub(file="output.sub", out.type="Q", subID=NA, col.names=NULL, tstep,

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
'rch2zoo'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 5 NOTEs
See
'/00check.log'
for details.



Installation log: 00install.out

Distribution log

SVN checkout/GIT clone log


Build log for Windows 7 (R 3.0.x)

(SWAT2R 0.1-9)
* installing to library 'z:/rforge/Rlib/win7-3.0'
* installing *source* package 'SWAT2R' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* MD5 sums
packaged installation of 'SWAT2R' as SWAT2R_0.1-9.zip
* DONE (SWAT2R)