rJava

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Package R docs

Version: 1.0-11
Result: OK
Check time: 2024-09-24 05:19

* using log directory ‘’
* using R Under development (unstable) (2024-09-23 r87189)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Debian 12.2.0-14) 12.2.0
GNU Fortran (Debian 12.2.0-14) 12.2.0
* running under: Debian GNU/Linux 12 (bookworm)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘rJava/DESCRIPTION’ ... OK
* this is package ‘rJava’ version ‘1.0-11’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rJava’ can be installed ... [16s/13s] OK
* used C compiler: ‘gcc (Debian 12.2.0-14) 12.2.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
‘jri’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS’:
Cannot process chunk/lines:
0.3-6 2006-01-30
Cannot process chunk/lines:
0.3-5 2006-01-02
Cannot process chunk/lines:
0.3-4 2005-12-28
Cannot process chunk/lines:
0.3-3 2005-12-20
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found the following possibly unsafe calls:
File ‘rJava/R/import.R’:
unlockBinding(IMPORTER, env = env)
assignInNamespace(IMPORTER, importer, envir = env)
File ‘rJava/R/jinit.R’:
unlockBinding(x, .env)
unlockBinding(x, pe)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... NOTE
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
jri/src/Makefile.win
jri/src/win32/Makefile
src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives. However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME. This option can be specified
multiple times to include multiple Makefiles. Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/rJava/libs/rJava.so’:
Found ‘_exit’, possibly from ‘_exit’ (C)
Found ‘stderr’, possibly from ‘stderr’ (C)
Found ‘stdout’, possibly from ‘stdout’ (C)
File ‘rJava/libs/rJava.so’:
Found non-API calls to R: ‘R_CStackLimit’, ‘R_CStackStart’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
* checking examples ... OK
* checking examples with --run-donttest ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 6 NOTEs
See
‘/00check.log’
for details.

Installation log: 00install.out

Distribution log

SVN checkout/GIT clone log

Build log for Windows (R 2.11.x)

* checking for file 'rJava/DESCRIPTION' ... OK
* preparing 'rJava':
* checking DESCRIPTION meta-information ... OK
* cleaning src
Makevars.win:20: JAVA_HOME is C:\\jdk1.4.2_04
Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:\\jdk1.4.2_04/include -IC:\\jdk1.4.2_04/include/win32
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building binary distribution
WARNING: some HTML links may not be found
* installing *source* package 'rJava' ...
Generate Windows-specific files (src/jvm-w32) ...
make: Entering directory `/cygdrive/c/tmp/Rbuild207278002/rJava/src/jvm-w32'
dlltool --input-def jvm.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a
gcc -O2 -c -o findjava.o findjava.c
gcc -s -o findjava.exe findjava.o
make: Leaving directory `/cygdrive/c/tmp/Rbuild207278002/rJava/src/jvm-w32'
Find Java...
JAVA_HOME=C:/jdk1.6
=== Building JRI ===
JAVA_HOME=C:/jdk1.6
R_HOME=c:/PROGRA~1/r/R-211~1.0
Creating Makefiles ...
Configuration done.
make -C src JRI.jar
make[1]: Entering directory `/cygdrive/c/tmp/Rbuild207278002/rJava/jri/src'
C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java
C:/jdk1.6/bin/javah -d . -classpath . org.rosuda.JRI.Rengine
gcc -c -o Rengine.o Rengine.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -Ic:/PROGRA~1/r/R-211~1.0/include
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParse':
Rengine.c:115: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniEval':
Rengine.c:129: warning: cast to pointer from integer of different size
Rengine.c:130: warning: cast to pointer from integer of different size
Rengine.c:153: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniAssign':
Rengine.c:173: warning: cast to pointer from integer of different size
Rengine.c:174: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniProtect':
Rengine.c:183: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniRelease':
Rengine.c:195: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPreserve':
Rengine.c:201: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPrintValue':
Rengine.c:207: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParentEnv':
Rengine.c:213: warning: cast to pointer from integer of different size
Rengine.c:213: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniFindVar':
Rengine.c:222: warning: cast to pointer from integer of different size
Rengine.c:222: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniListEnv':
Rengine.c:228: warning: cast to pointer from integer of different size
Rengine.c:228: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSpecialObject':
Rengine.c:235: warning: cast from pointer to integer of different size
Rengine.c:236: warning: cast from pointer to integer of different size
Rengine.c:237: warning: cast from pointer to integer of different size
Rengine.c:238: warning: cast from pointer to integer of different size
Rengine.c:239: warning: cast from pointer to integer of different size
Rengine.c:240: warning: cast from pointer to integer of different size
Rengine.c:241: warning: cast from pointer to integer of different size
Rengine.c:242: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniXrefToJava':
Rengine.c:250: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniJavaToXref':
Rengine.c:260: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetString':
Rengine.c:266: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetStringArray':
Rengine.c:273: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetIntArray':
Rengine.c:279: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetRawArray':
Rengine.c:285: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetBoolArrayI':
Rengine.c:291: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetDoubleArray':
Rengine.c:297: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetVector':
Rengine.c:303: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniExpType':
Rengine.c:309: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutString':
Rengine.c:329: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutStringArray':
Rengine.c:335: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutIntArray':
Rengine.c:341: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutRawArray':
Rengine.c:347: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArrayI':
Rengine.c:353: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArray':
Rengine.c:359: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutDoubleArray':
Rengine.c:365: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutVector':
Rengine.c:371: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttr':
Rengine.c:378: warning: cast to pointer from integer of different size
Rengine.c:380: warning: cast to pointer from integer of different size
Rengine.c:381: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttrNames':
Rengine.c:388: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSetAttr':
Rengine.c:420: warning: cast to pointer from integer of different size
Rengine.c:422: warning: cast to pointer from integer of different size
Rengine.c:422: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInstallSymbol':
Rengine.c:435: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetSymbolName':
Rengine.c:441: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInherits':
Rengine.c:451: warning: cast to pointer from integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCons':
Rengine.c:462: warning: cast to pointer from integer of different size
Rengine.c:462: warning: cast to pointer from integer of different size
Rengine.c:464: warning: cast to pointer from integer of different size
Rengine.c:464: warning: cast to pointer from integer of different size
Rengine.c:466: warning: cast to pointer from integer of different size
Rengine.c:467: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCAR':
Rengine.c:474: warning: cast to pointer from integer of different size
Rengine.c:475: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCDR':
Rengine.c:484: warning: cast to pointer from integer of different size
Rengine.c:485: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniTAG':
Rengine.c:494: warning: cast to pointer from integer of different size
Rengine.c:495: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutList':
Rengine.c:510: warning: cast from pointer to integer of different size
Rengine.c:515: warning: cast to pointer from integer of different size
Rengine.c:520: warning: cast from pointer to integer of different size
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetList':
Rengine.c:527: warning: cast to pointer from integer of different size
Rengine.c:554: warning: cast from pointer to integer of different size
gcc -c -o jri.o jri.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -Ic:/PROGRA~1/r/R-211~1.0/include
jri.c: In function 'jri_putSEXPLArray':
jri.c:193: warning: cast from pointer to integer of different size
jri.c: In function 'jri_getObjectArray':
jri.c:308: warning: cast from pointer to integer of different size
jri.c: In function 'jri_getSEXPLArray':
jri.c:472: warning: cast to pointer from integer of different size
gcc -c -o Rcallbacks.o Rcallbacks.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -Ic:/PROGRA~1/r/R-211~1.0/include
gcc -c -o Rinit.o Rinit.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -Ic:/PROGRA~1/r/R-211~1.0/include
Rinit.c: In function 'initR':
Rinit.c:248: warning: assignment from incompatible pointer type
Rinit.c:254: warning: assignment from incompatible pointer type
Rinit.c:277: warning: implicit declaration of function 'signal'
gcc -c -o globals.o globals.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32
gcc -c -o rjava.o rjava.c -O3 -Wall -std=gnu99 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/jdk1.6/include -IC:/jdk1.6/include/win32
make -C win32 libjvm.dll.a
make[2]: Entering directory `/cygdrive/c/tmp/Rbuild207278002/rJava/jri/src/win32'
dlltool --input-def jvm.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a
make[2]: Leaving directory `/cygdrive/c/tmp/Rbuild207278002/rJava/jri/src/win32'
gcc -o jri.dll Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o win32/libjvm.dll.a -shared -Lwin32 -ljvm -Lc:/PROGRA~1/r/R-211~1.0/src/gnuwin32 -Lc:/PROGRA~1/r/R-211~1.0/bin -lR -Wl,--kill-at
C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java
C:/jdk1.6/bin/jar fc JRI.jar org jri.dll
make[1]: Leaving directory `/cygdrive/c/tmp/Rbuild207278002/rJava/jri/src'
rm -f jri.dll
cp src/jri.dll jri.dll
C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java
Note: examples\rtest.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
C:/jdk1.6/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java
Note: examples\rtest2.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
echo "set PATH=%PATH%;c:/PROGRA~1/r/R-211~1.0\\bin;c:/PROGRA~1/r/R-211~1.0\\lib" > run.bat
echo "C:/jdk1.6/bin/java -cp .;examples;JRI.jar;src/JRI.jar rtest \$*" >> run.bat
=== JRI built ===
Configuration done.
** libs
making DLL ...
Makevars.win:20: JAVA_HOME is C:/jdk1.6
Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c Rglue.c -o Rglue.o
Rglue.c:831: warning: 'new_jrectRef' defined but not used
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c arrayc.c -o arrayc.o
arrayc.c: In function 'RgetShortArrayCont':
arrayc.c:161: warning: 'o' may be used uninitialized in this function
arrayc.c: In function 'RgetCharArrayCont':
arrayc.c:124: warning: 'o' may be used uninitialized in this function
arrayc.c: In function 'RgetBoolArrayCont':
arrayc.c:87: warning: 'o' may be used uninitialized in this function
arrayc.c: In function 'RgetLongArrayCont':
arrayc.c:294: warning: 'o' may be used uninitialized in this function
arrayc.c: In function 'RgetFloatArrayCont':
arrayc.c:260: warning: 'o' may be used uninitialized in this function
arrayc.c: In function 'RgetDoubleArrayCont':
arrayc.c:229: warning: 'o' may be used uninitialized in this function
arrayc.c: In function 'RgetIntArrayCont':
arrayc.c:56: warning: 'o' may be used uninitialized in this function
arrayc.c: In function 'RgetByteArrayCont':
arrayc.c:198: warning: 'o' may be used uninitialized in this function
arrayc.c: In function 'RgetObjectArrayCont':
arrayc.c:12: warning: 'o' may be used uninitialized in this function
arrayc.c: In function 'RgetSimpleClassNames':
arrayc.c:420: warning: 'jobj' may be used uninitialized in this function
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c callJNI.c -o callJNI.o
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c callback.c -o callback.o
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c fields.c -o fields.o
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c init.c -o init.o
init.c: In function 'initJVM':
init.c:140: warning: dereferencing type-punned pointer will break strict-aliasing rules
init.c: In function 'RinitJVM':
init.c:291: warning: dereferencing type-punned pointer will break strict-aliasing rules
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c jri_glue.c -o jri_glue.o
jri_glue.c: In function 'PushToREXP':
jri_glue.c:24: warning: cast from pointer to integer of different size
jri_glue.c: In function 'RReleaseREXP':
jri_glue.c:52: warning: cast to pointer from integer of different size
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c loader.c -o loader.o
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c otables.c -o otables.o
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c rJava.c -o rJava.o
rJava.c: In function 'getJNIEnv':
rJava.c:209: warning: dereferencing type-punned pointer will break strict-aliasing rules
gcc -I"c:/PROGRA~1/r/R-211~1.0/include" -D_R_ -DWin32 -Ic:/PROGRA~1/r/R-211~1.0/src/include -IC:/jdk1.6/include -IC:/jdk1.6/include/win32 -O3 -Wall -std=gnu99 -c tools.c -o tools.o
gcc -shared -s -static-libgcc -o rJava.dll tmp.def Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -Ljvm-w32 -ljvm.dll -Lc:/PROGRA~1/r/R-211~1.0/bin -lR
installing to c:/tmp/Rinst207243237/rJava/libs
... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** MD5 sums
** testing if installed package can be loaded
packaged installation of 'rJava' as rJava_0.8-7.zip

* DONE (rJava)

Build log for Windows 64-bit (R 2.11.x)

Build log for Mac OS X 10.5 (R 2.16.x)

* installing *source* package 'rJava' ...
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether time.h and sys/time.h may both be included... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for java... /usr/bin/java
checking Java environment home... in /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home
checking for /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/jni.h... yes
checking for /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/./jni_md.h... yes
checking whether JNI programs can be compiled... yes
checking JNI data types... ok
checking whether JRI should be compiled (autodetect)... yes
checking whether debugging output should be enabled... no
checking whether threads support is requested... no
checking whether callbacks support is requested... no
checking whether JNI cache support is requested... no
checking whether JRI is requested... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating R/zzz.R
config.status: creating src/config.h
=== configuring in jri (/Volumes/Tiger/Builds/rforge/builds/osx9-2.16/rJava/jri)
configure: running /bin/sh ./configure '--prefix=/usr/local' --cache-file=/dev/null --srcdir=.
checking build system type... i386-apple-darwin9.8.0
checking host system type... i386-apple-darwin9.8.0
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E
checking for egrep... grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for java... /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/java
checking for javac... /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/javac
checking for javah... /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/javah
checking for jar... /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/jar
checking whether Java interpreter works... yes
checking for Java environment... in /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home
checking for /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/jni.h... yes
checking for /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/./jni_md.h... yes
checking whether JNI programs can be compiled... yes
checking whether JNI programs can be run... yes
checking JNI data types... ok
=== building universal JNI library - use FORCE_NATIVE=yes to avoid this ===
checking whether Rinterface.h exports R_CStackXXX variables... yes
checking whether Rinterface.h exports R_SignalHandlers... yes
configure: creating ./config.status
config.status: creating src/Makefile
config.status: creating Makefile
config.status: creating run
config.status: creating src/config.h
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -fPIC -g -O2 -c Rglue.c -o Rglue.o
Rglue.c: In function 'RinitJVM':
Rglue.c:207: warning: assignment discards qualifiers from pointer target type
Rglue.c:214: warning: assignment discards qualifiers from pointer target type
Rglue.c: In function 'Rpar2jvalue':
Rglue.c:299: warning: passing argument 2 of 'newString' discards qualifiers from pointer target type
Rglue.c:306: warning: passing argument 2 of 'newString' discards qualifiers from pointer target type
Rglue.c:391: warning: assignment discards qualifiers from pointer target type
Rglue.c:396: warning: assignment discards qualifiers from pointer target type
Rglue.c: In function 'RcallMethod':
Rglue.c:845: warning: assignment discards qualifiers from pointer target type
Rglue.c:864: warning: assignment discards qualifiers from pointer target type
Rglue.c: In function 'RcallStaticMethod':
Rglue.c:1041: warning: assignment discards qualifiers from pointer target type
Rglue.c:1051: warning: assignment discards qualifiers from pointer target type
Rglue.c:1057: warning: assignment discards qualifiers from pointer target type
Rglue.c: In function 'RgetField':
Rglue.c:1211: warning: assignment discards qualifiers from pointer target type
Rglue.c:1217: warning: assignment discards qualifiers from pointer target type
Rglue.c: In function 'RcreateObject':
Rglue.c:1311: warning: assignment discards qualifiers from pointer target type
Rglue.c: In function 'RcreateArray':
Rglue.c:1404: warning: passing argument 2 of 'newString' discards qualifiers from pointer target type
Rglue.c:1432: warning: initialization discards qualifiers from pointer target type
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -fPIC -g -O2 -c callJNI.c -o callJNI.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -fPIC -g -O2 -c callback.c -o callback.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -fPIC -g -O2 -c jri_glue.c -o jri_glue.o
jri_glue.c: In function 'PushToREXP':
jri_glue.c:24: warning: assignment discards qualifiers from pointer target type
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -fPIC -g -O2 -c rJava.c -o rJava.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rJava.so Rglue.o callJNI.o callback.o jri_glue.o rJava.o -framework JavaVM -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
make -C ../jri/
make -C src JRI.jar
/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java
/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/javah -d . -classpath . org.rosuda.JRI.Rengine
gcc -arch i386 -arch ppc -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include
gcc -arch i386 -arch ppc -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include
gcc -arch i386 -arch ppc -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/. -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include
Rcallbacks.c: In function 'Re_loadhistory':
Rcallbacks.c:274: warning: assignment discards qualifiers from pointer target type
Rcallbacks.c: In function 'Re_savehistory':
Rcallbacks.c:308: warning: assignment discards qualifiers from pointer target type
Rcallbacks.c: In function 'Re_loadhistory':
Rcallbacks.c:274: warning: assignment discards qualifiers from pointer target type
Rcallbacks.c: In function 'Re_savehistory':
Rcallbacks.c:308: warning: assignment discards qualifiers from pointer target type
gcc -arch i386 -arch ppc -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include
Rinit.c: In function 'initR':
Rinit.c:114: warning: assignment from incompatible pointer type
Rinit.c:115: warning: assignment from incompatible pointer type
Rinit.c:116: warning: assignment from incompatible pointer type
Rinit.c:121: warning: assignment from incompatible pointer type
Rinit.c: In function 'initR':
Rinit.c:114: warning: assignment from incompatible pointer type
Rinit.c:115: warning: assignment from incompatible pointer type
Rinit.c:116: warning: assignment from incompatible pointer type
Rinit.c:121: warning: assignment from incompatible pointer type
gcc -arch i386 -arch ppc -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/.
gcc -arch i386 -arch ppc -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -D_REENTRANT -fno-common -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include -I/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include/.
gcc -arch i386 -arch ppc -o libjri.jnilib Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o -dynamiclib -framework JavaVM -framework R
Undefined symbols:
"_Rf_checkArity", referenced from:
_Re_loadhistory in Rcallbacks.o
_Re_savehistory in Rcallbacks.o
ld: symbol(s) not found
collect2: ld returned 1 exit status
Undefined symbols:
"_Rf_checkArity", referenced from:
_Re_loadhistory in Rcallbacks.o
_Re_savehistory in Rcallbacks.o
ld: symbol(s) not found
collect2: ld returned 1 exit status
lipo: can't open input file: /var/tmp//ccOsg8Y3.out (No such file or directory)
make[2]: *** [libjri.jnilib] Error 1
make[1]: *** [src/JRI.jar] Error 2
make: *** [jri] Error 2
ERROR: compilation failed for package 'rJava'
* removing '/Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/rJava'
* restoring previous '/Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/rJava'

Build log for Windows 7 (R 3.0.x)

(rJava 0.9-5)
- building i386
* installing to library 'z:/rforge/Rlib/win7-3.0'
* installing *source* package 'rJava' ...
Generate Windows-specific files (src/jvm-w32) ...
make: Entering directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/src/jvm-w32'
dlltool --as as -m i386 --as-flags --32 --input-def jvm.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a
gcc -m32 -O2 -c -o findjava.o findjava.c
gcc -m32 -s -o findjava.exe findjava.o
make: Leaving directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/src/jvm-w32'
Find Java...
JAVA_HOME=C:/JDK1~1.6-I
=== Building JRI ===
JAVA_HOME=C:/JDK1~1.6-I
R_HOME=C:/PROGRA~1/r/r-3.0
Creating Makefiles ...
Configuration done.
make -C src JRI.jar
make[1]: Entering directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/jri/src'
C:/JDK1~1.6-I/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java
C:/JDK1~1.6-I/bin/javah -d . -classpath . org.rosuda.JRI.Rengine
gcc -m32 -c -o Rengine.o Rengine.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -IC:/PROGRA~1/r/r-3.0/include
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParse':
Rengine.c:121:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniEval':
Rengine.c:135:36: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:136:23: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:159:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniAssign':
Rengine.c:179:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:180:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniProtect':
Rengine.c:189:2: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniRelease':
Rengine.c:201:27: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPreserve':
Rengine.c:207:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPrintValue':
Rengine.c:213:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniParentEnv':
Rengine.c:219:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:219:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniFindVar':
Rengine.c:228:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:228:9: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniListEnv':
Rengine.c:234:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:234:9: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSpecialObject':
Rengine.c:241:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c:242:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c:243:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c:244:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c:245:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c:246:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c:247:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c:248:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniXrefToJava':
Rengine.c:256:12: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniJavaToXref':
Rengine.c:266:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetString':
Rengine.c:272:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetStringArray':
Rengine.c:279:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetIntArray':
Rengine.c:285:35: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetRawArray':
Rengine.c:291:36: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetBoolArrayI':
Rengine.c:297:37: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetDoubleArray':
Rengine.c:303:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetVector':
Rengine.c:309:35: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniExpType':
Rengine.c:315:25: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutString':
Rengine.c:335:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutStringArray':
Rengine.c:341:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutIntArray':
Rengine.c:347:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutRawArray':
Rengine.c:353:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArrayI':
Rengine.c:359:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutBoolArray':
Rengine.c:365:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutDoubleArray':
Rengine.c:371:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutVector':
Rengine.c:377:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttr':
Rengine.c:384:44: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:386:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:387:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetAttrNames':
Rengine.c:394:14: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniSetAttr':
Rengine.c:426:44: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:428:15: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:428:53: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInstallSymbol':
Rengine.c:441:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetSymbolName':
Rengine.c:447:32: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniInherits':
Rengine.c:457:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCons':
Rengine.c:468:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:468:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:470:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:470:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:472:23: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:473:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCAR':
Rengine.c:480:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:481:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniCDR':
Rengine.c:490:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:491:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniTAG':
Rengine.c:500:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:501:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniPutList':
Rengine.c:516:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c:521:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:526:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Rengine.c: In function 'Java_org_rosuda_JRI_Rengine_rniGetList':
Rengine.c:533:12: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
Rengine.c:560:51: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
gcc -m32 -c -o jri.o jri.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -IC:/PROGRA~1/r/r-3.0/include
jri.c: In function 'jri_putSEXPLArray':
jri.c:193:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
jri.c: In function 'jri_getObjectArray':
jri.c:308:27: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
jri.c: In function 'jri_getSEXPLArray':
jri.c:472:31: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
gcc -m32 -c -o Rcallbacks.o Rcallbacks.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -IC:/PROGRA~1/r/r-3.0/include
gcc -m32 -c -o Rinit.o Rinit.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/r/r-3.0/include
Rinit.c: In function 'initR':
Rinit.c:250:21: warning: assignment from incompatible pointer type [enabled by default]
Rinit.c:256:21: warning: assignment from incompatible pointer type [enabled by default]
Rinit.c:279:5: warning: implicit declaration of function 'signal' [-Wimplicit-function-declaration]
gcc -m32 -c -o globals.o globals.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32
gcc -m32 -c -o rjava.o rjava.c -O3 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32
make -C win32 libjvm.dll.a
make[2]: Entering directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/jri/src/win32'
dlltool --as as -m i386 --as-flags --32 --input-def jvm.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a
make[2]: Leaving directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/jri/src/win32'
gcc -m32 -o jri.dll Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o win32/libjvm.dll.a -shared -Lwin32 -ljvm -LC:/PROGRA~1/r/r-3.0/src/gnuwin32 -LC:/PROGRA~1/r/r-3.0/bin/i386 -lR -Wl,--kill-at
C:/JDK1~1.6-I/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java
C:/JDK1~1.6-I/bin/jar fc JRI.jar org jri.dll
make[1]: Leaving directory `/cygdrive/c/tmp/RtmpgrWohC/R.INSTALL3e4434dab/rJava/jri/src'
rm -f jri.dll
cp src/jri.dll jri.dll
C:/JDK1~1.6-I/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java
Note: examples\rtest.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
C:/JDK1~1.6-I/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java
Note: examples\rtest2.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
echo "set PATH=%PATH%;C:/PROGRA~1/r/r-3.0\\bin;C:/PROGRA~1/r/r-3.0\\lib" > run.bat
echo "C:/JDK1~1.6-I/bin/java -cp .;examples;JRI.jar;src/JRI.jar rtest \$*" >> run.bat
=== JRI built ===
Configuration done.
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture

Makevars.win:20: JAVA_HOME is C:/JDK1~1.6-I
Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Rglue.c -o Rglue.o
Rglue.c:836:13: warning: 'new_jrectRef' defined but not used [-Wunused-function]
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c arrayc.c -o arrayc.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c callJNI.c -o callJNI.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c callback.c -o callback.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c fields.c -o fields.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c jri_glue.c -o jri_glue.o
jri_glue.c: In function 'PushToREXP':
jri_glue.c:24:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
jri_glue.c: In function 'RReleaseREXP':
jri_glue.c:52:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c loader.c -o loader.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c otables.c -o otables.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rJava.c -o rJava.o
gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-I/include -IC:/JDK1~1.6-I/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c tools.c -o tools.o
gcc -m32 -shared -s -static-libgcc -o rJava.dll tmp.def Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -Ljvm-w32 -ljvm.dll -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/i386 -lR
installing via 'install.libs.R' to z:/rforge/Rlib/win7-3.0/rJava
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (rJava)

- building x64
* installing to library 'z:/rforge/Rlib/win7-3.0'
* installing *source* package 'rJava' ...
Generate Windows-specific files (src/jvm-w32) ...
make: Entering directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/src/jvm-w32'
dlltool --as as -m i386:x86-64 --as-flags --64 --input-def jvm64.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a
gcc -m64 -O2 -c -o findjava.o findjava.c
gcc -m64 -s -o findjava.exe findjava.o
make: Leaving directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/src/jvm-w32'
Find Java...
JAVA_HOME=C:/JDK1~1.6-X
=== Building JRI ===
JAVA_HOME=C:/JDK1~1.6-X
R_HOME=C:/PROGRA~1/r/r-3.0
Creating Makefiles ...
Configuration done.
make -C src JRI.jar
make[1]: Entering directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/jri/src'
C:/JDK1~1.6-X/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java
C:/JDK1~1.6-X/bin/javah -d . -classpath . org.rosuda.JRI.Rengine
gcc -m64 -c -o Rengine.o Rengine.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -IC:/PROGRA~1/r/r-3.0/include
gcc -m64 -c -o jri.o jri.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -IC:/PROGRA~1/r/r-3.0/include
gcc -m64 -c -o Rcallbacks.o Rcallbacks.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -IC:/PROGRA~1/r/r-3.0/include
gcc -m64 -c -o Rinit.o Rinit.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/r/r-3.0/include
Rinit.c: In function 'initR':
Rinit.c:250:21: warning: assignment from incompatible pointer type [enabled by default]
Rinit.c:256:21: warning: assignment from incompatible pointer type [enabled by default]
Rinit.c:279:5: warning: implicit declaration of function 'signal' [-Wimplicit-function-declaration]
gcc -m64 -c -o globals.o globals.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32
gcc -m64 -c -o rjava.o rjava.c -O2 -Wall -std=gnu99 -mtune=core2 -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32
make -C win32 libjvm.dll.a
make[2]: Entering directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/jri/src/win32'
dlltool --as as -m i386:x86-64 --as-flags --64 --input-def jvm64.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a
make[2]: Leaving directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/jri/src/win32'
gcc -m64 -o jri.dll Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o win32/libjvm.dll.a -shared -Lwin32 -ljvm -LC:/PROGRA~1/r/r-3.0/src/gnuwin32 -LC:/PROGRA~1/r/r-3.0/bin/x64 -lR -Wl,--kill-at
C:/JDK1~1.6-X/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java
C:/JDK1~1.6-X/bin/jar fc JRI.jar org jri.dll
make[1]: Leaving directory `/cygdrive/c/tmp/Rtmp6L0HVs/R.INSTALLb68dcd18c7/rJava/jri/src'
rm -f jri.dll
cp src/jri.dll jri.dll
C:/JDK1~1.6-X/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java
Note: examples\rtest.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
C:/JDK1~1.6-X/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java
Note: examples\rtest2.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
echo "set PATH=%PATH%;C:/PROGRA~1/r/r-3.0\\bin;C:/PROGRA~1/r/r-3.0\\lib" > run.bat
echo "C:/JDK1~1.6-X/bin/java -cp .;examples;JRI.jar;src/JRI.jar rtest \$*" >> run.bat
=== JRI built ===
Configuration done.
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture

Makevars.win:20: JAVA_HOME is C:/JDK1~1.6-X
Makevars.win:28: PKG_CPPFLAGS are -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Rglue.c -o Rglue.o
Rglue.c:836:13: warning: 'new_jrectRef' defined but not used [-Wunused-function]
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c arrayc.c -o arrayc.o
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c callJNI.c -o callJNI.o
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c callback.c -o callback.o
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c fields.c -o fields.o
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c jri_glue.c -o jri_glue.o
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c loader.c -o loader.o
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c otables.c -o otables.o
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rJava.c -o rJava.o
gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -D_R_ -DWin32 -I/src/include -IC:/JDK1~1.6-X/include -IC:/JDK1~1.6-X/include/win32 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c tools.c -o tools.o
gcc -m64 -shared -s -static-libgcc -o rJava.dll tmp.def Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -Ljvm-w32 -ljvm.dll -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/x64 -lR
installing via 'install.libs.R' to z:/rforge/Rlib/win7-3.0/rJava
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (rJava)