ConsPlan
About ConsPlan
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Version: 0.1
Result: ERROR Check time: 2021-09-08 04:23 * using log directory '' * using R Under development (unstable) (2021-09-06 r80865) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: ASCII * using option '--as-cran' * checking for file 'ConsPlan/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ConsPlan' version '0.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package 'ConsPlan' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Non-standard license specification: GPL version 2 or newer Standardizable: TRUE Standardized license specification: GPL (>= 2) * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: 'sann' All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Objects in \usage without \alias in documentation object 'sann': 'sann' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... NOTE File 'ConsPlan/libs/ConsPlan.so': Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols' It is good practice to register native routines and to disable symbol search. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking examples ... ERROR Running examples in 'ConsPlan-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: sann > ### Title: Simulated Anneal Optimization > ### Aliases: lcmw > > ### ** Examples > > > ## Traveling salesman problem (modified from \code{optim}) > library(stats) # normally loaded > > eurodistmat <- as.matrix(eurodist) > > distance <- function(sq) { # Target function + sq2 <- embed(sq, 2) + return(as.numeric(sum(eurodistmat[cbind(sq2[,2],sq2[,1])]))) + } > > genseq <- function(sq) { # Generate new candidate sequence + idx <- seq(2, NROW(eurodistmat)-1, by=1) + changepoints <- sample(idx, size=2, replace=FALSE) + tmp <- sq[changepoints[1]] + sq[changepoints[1]] <- sq[changepoints[2]] + sq[changepoints[2]] <- tmp + return(as.numeric(sq)) + } > > sq <- c(1,2:NROW(eurodistmat),1) # Initial sequence > distance(sq) [1] 29625 > > set.seed(123) # chosen to get a good soln relatively quickly > res <- sann(sq, distance, genseq, maxit=30000, REPORT=500, temp=2000) initial value 29625.000000 iter 5000 value 13786.000000 iter 10000 value 13647.000000 iter 15000 value 13433.000000 iter 20000 value 13433.000000 Error in sann(sq, distance, genseq, maxit = 30000, REPORT = 500, temp = 2000) : REAL() can only be applied to a 'numeric', not a 'NULL' Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 WARNINGs, 2 NOTEs See '/00check.log' for details. Installation log: 00install.out
Build log for Mac OS X 10.5 (R 2.16.x)* installing *source* package 'ConsPlan' ... ** libs *** arch - i386 gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c sann.c -o sann.o gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ConsPlan.so sann.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/ConsPlan/libs/i386 *** arch - ppc gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c sann.c -o sann.o gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ConsPlan.so sann.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/ConsPlan/libs/ppc *** arch - x86_64 gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -c sann.c -o sann.o gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ConsPlan.so sann.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Tiger/Builds/rforge/Rlib/osx9-2.16/ConsPlan/libs/x86_64 ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded *** arch - i386 *** arch - ppc *** arch - x86_64 packaged installation of 'ConsPlan' as 'ConsPlan_0.1.tgz' * DONE (ConsPlan) Build log for Windows 7 (R 3.0.x) (ConsPlan 0.1) * installing to library 'z:/rforge/Rlib/win7-3.0' * installing *source* package 'ConsPlan' ... ** libs *** arch - i386 gcc -m32 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c sann.c -o sann.o gcc -m32 -shared -s -static-libgcc -o ConsPlan.dll tmp.def sann.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/i386 -lR installing to z:/rforge/Rlib/win7-3.0/ConsPlan/libs/i386 *** arch - x64 gcc -m64 -I"C:/PROGRA~1/r/r-3.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c sann.c -o sann.o gcc -m64 -shared -s -static-libgcc -o ConsPlan.dll tmp.def sann.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/r/r-3.0/bin/x64 -lR installing to z:/rforge/Rlib/win7-3.0/ConsPlan/libs/x64 ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded *** arch - i386 *** arch - x64 * MD5 sums packaged installation of 'ConsPlan' as ConsPlan_0.1.zip * DONE (ConsPlan) |