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| IMA-package | IMA(Illumina Methylation Analyzer) is a package designed to automate the pipeline for exploratory analysis and summarization of site-level and region-level methylation changes in epigenetic studies utilizing the 450K DNA methylation microarray |
| annotfunc | Annotate siteIDs/regionIDs of interest |
| exprmethy450 | Load methylation 450k data |
| IMA | IMA(Illumina Methylation Analyzer) is a package designed to automate the pipeline for exploratory analysis and summarization of site-level and region-level methylation changes in epigenetic studies utilizing the 450K DNA methylation microarray |
| IMA.methy450PP | Data preprocessing and quality control |
| IMA.methy450R | Load methylation 450k data |
| indexregionfunc | Region-level Methylation Index Calculation |
| methy450batch | Data preprocessing and quality control |
| outputDMfunc | Output the differentially methylated sites/regions |
| regionswrapper | Differential methylation testing on all 11 categories of annotated region |
| sitetest | Site-level Differential Methylation Analysis |
| testfunc | Differential methylation testing function |